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Views
Votes
Showing :
Iranges
•
reset
1
vote
4
replies
595
views
Is there a way to allow elements with no IRanges when subsetting an IRangesList
IRanges
Biostrings
S4Vectors
written 26 days ago by
Christine Jones
• 0
3
votes
4
replies
1.3k
views
Error with importFrom and GenomicRanges in NAMESPACE
GenomicRanges
IRanges
updated 20 months ago by
Hervé Pagès
16k • written 20 months ago by
jbendik
• 0
0
votes
0
replies
686
views
adding peptides to a multiple sequence alignment
msa
IRanges
Biostrings
22 months ago
Mario Dejung
• 0
1
vote
2
replies
1.3k
views
how to plot iranges in r version 4.0.0?
IRanges
updated 2.0 years ago by
alekeuro
▴ 10 • written 4.4 years ago by
aissabenyoucef
• 0
2
votes
1
reply
2.3k
views
Removing metadata rows containing NA values in GRanges
IRanges
GRanges
NA
updated 2.1 years ago by
ATpoint
★ 4.5k • written 2.1 years ago by
Timucin
• 0
1
vote
2
replies
1.2k
views
IRanges vignette code comment
iranges
updated 2.4 years ago by
Kristopher Villa
• 0 • written 9.7 years ago by
Michael Love
42k
0
votes
3
replies
837
views
Extracting values from out-of-bounds Rle Views
IRanges
XVector
AtomicList
written 2.5 years ago by
Pierre-Luc Germain
▴ 20
1
vote
2
replies
1.9k
views
Extracting Score/Coverage From GRange Object
IRanges
rtracklayer
GenomicRanges
2.6 years ago
vanbelj
▴ 30
2
votes
3
replies
1.3k
views
slidingIRanges in IRanges ... odd behavior
IRanges
updated 21 months ago by
axelrhuber
• 0 • written 3.1 years ago by
story.benjamin
▴ 20
1
vote
2
replies
1.1k
views
How to apply a function to a RleViesList object?
Views
IRanges
GRanges
RleList
updated 3.1 years ago by
Mike Smith
★ 6.6k • written 3.1 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.4k
views
how to get genomic coordinates from an MIndex object
IRanges
MIndex
updated 3.3 years ago by
Michael Lawrence
★ 11k • written 3.3 years ago by
Ann Loraine
▴ 110
1
vote
4
replies
1.8k
views
IRanges::findOverlapPairs cannot take inputs if they are too large
IRanges
GenomicRanges
3.6 years ago • updated 3.5 years ago
Yixin
• 0
1
vote
1
reply
1000
views
mean coverage plot of IRanges / Granges object
IRanges
updated 3.6 years ago by
James W. MacDonald
67k • written 3.6 years ago by
n.mary
• 0
1
vote
2
replies
1.4k
views
Question about nearest function in R package IRanges
nearest
IRanges
updated 3.7 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
junhui.li11
• 0
2
votes
3
replies
1.3k
views
Recycling a DNAStringSet over an IRangesList in extractAt()
Biostrings
IRanges
3.9 years ago
Nicholas Cooley
• 0
1
vote
1
reply
1.6k
views
GenomicRanges equivalent to bedtools cluster
IRanges
GenomicRanges
updated 4.0 years ago by
James W. MacDonald
67k • written 4.0 years ago by
kalamari
• 0
0
votes
1
reply
1.1k
views
need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR
granges
iranges
updated 4.1 years ago by
bernatgel
▴ 150 • written 4.5 years ago by
Angel Liang
• 0
0
votes
1
reply
1.3k
views
How can i get repetitive elements genomic ranges in human genome?
repetitive elements
IRanges
GenomicRanges
BSgenome
updated 4.2 years ago by
James W. MacDonald
67k • written 4.2 years ago by
vinod.acear
▴ 50
0
votes
1
reply
1.1k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 4.4 years ago by
Aaron Lun
★ 28k • written 4.4 years ago by
lklei001
• 0
8
votes
10
replies
2.4k
views
Compare ranges from two GRanges and check if the ranges from the first GRanges is contained in another.
GRanges
IRanges
updated 4.5 years ago by
James W. MacDonald
67k • written 4.5 years ago by
omarrafiqued
▴ 50
4
votes
6
replies
1.4k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
4.5 years ago
mirkocelii
▴ 40
0
votes
0
replies
1.0k
views
No methods found in package Biobase for request: read.AnnotatedDataFrame
software error
biobase
Iranges
ArrayExpressHTS
4.7 years ago
Ed Siefker
▴ 230
8
votes
12
replies
6.1k
views
Intergenic coordinates with Genomic Feaures
genomicranges
genomicfeatures
iranges
updated 2.4 years ago by
mehdi
• 0 • written 9.7 years ago by
cookie
▴ 20
0
votes
0
replies
985
views
Is the ballgownrsem function still supported?
ballgown
rsem
iranges
4.9 years ago
YH
• 0
0
votes
4
replies
1.9k
views
IRanges: solving row 5: range cannot be determined from the supplied arguments (too many NAs)
IRanges
rtracklayer
updated 5.1 years ago by
James W. MacDonald
67k • written 5.1 years ago by
jovel_juan
▴ 30
0
votes
0
replies
869
views
DMDeepm6A: solve_user_SEW0", start, end, width, PACKAGE = "IRanges
rtracklayer
IRanges
DMDeepm6A
5.1 years ago
jovel_juan
▴ 30
0
votes
1
reply
2.8k
views
Error in IRanges, In range 1: 'end' must be >= 'start' - 1.: .Call2(\"solve_user_SEW0\", start, end, width, PACKAGE = \"IRanges\")"
Genomicranges
IRanges
updated 5.1 years ago by
James W. MacDonald
67k • written 5.1 years ago by
bioinagesh
• 0
0
votes
7
replies
2.0k
views
Best way to subset one IRanges by list of IRanges
iranges
5.2 years ago
Robert M. Flight
▴ 280
1
vote
3
replies
2.0k
views
Correct way to split and unsplit a DataFrame
s4vectors
iranges
updated 5.2 years ago by
Michael Lawrence
★ 11k • written 5.2 years ago by
Michael Steinbaugh
▴ 90
0
votes
1
reply
855
views
Diffbind problems with negative widths in IRanges and chromosome ranges after dba.report
diffbind
IRanges
updated 5.3 years ago by
Rory Stark
★ 5.2k • written 5.3 years ago by
akutsch
• 0
0
votes
1
reply
971
views
Annotating protein sequences
Protein
iranges
sequencing
5.7 years ago
ieuangw
• 0
2
votes
2
replies
2.3k
views
Error in installation of scran
S4Vectors
IRanges
XVector
GenomicRanges
scran
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
Momo
• 0
4
votes
2
replies
1.3k
views
Speed efficient way to select the n-th element from GRangsList
R
GenomicRanges
IRanges
5.9 years ago
foehn
▴ 100
5
votes
8
replies
9.7k
views
Non overlapping granges (or opposite of subsetByOverlaps)
granges
genomicranges
iranges
subsetByOverlaps
updated 2.8 years ago by
b.simpson
• 0 • written 9.2 years ago by
vinod.acear
▴ 50
2
votes
1
reply
1.2k
views
Bug in follow and precede
software error
genomicranges
iranges
updated 6.0 years ago by
Valerie Obenchain
★ 6.8k • written 6.0 years ago by
abc
• 0
0
votes
3
replies
1.3k
views
GenomicRanges based on indices or more conditions, and add column from match
genomicranges
iranges
findoverlaps
6.1 years ago
francesca casalino
▴ 50
3
votes
3
replies
1.5k
views
Gaia results including negative widths
gaia
genomicranges
iranges
updated 6.3 years ago by
Sandro Morganella
▴ 40 • written 6.3 years ago by
Talip Zengin
▴ 10
2
votes
1
reply
977
views
IRanges seqselect and subsetByRanges
Iranges
defunct
updated 6.3 years ago by
Michael Lawrence
★ 11k • written 6.3 years ago by
joseluis.ruiz
• 0
0
votes
15
replies
2.4k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 6.3 years ago by
becker.gabriel
▴ 10 • written 6.3 years ago by
chokoiboko
• 0
0
votes
0
replies
1.1k
views
IRanges error while input rsem data into ballgown : .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges")
ballgown
rsem
iranges
6.3 years ago
kicheol.kim
• 0
1
vote
0
replies
2.2k
views
IRanges error while input rsem data into ballgown : .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges")
ballgown
rsem
iranges
6.4 years ago • updated 6.3 years ago
kicheol.kim
• 0
0
votes
1
reply
1.2k
views
TEQC - new version Bioc - problem with IRanges
teqc
iranges
updated 6.4 years ago by
m.hummel
▴ 10 • written 6.4 years ago by
msourdeix
• 0
0
votes
0
replies
1.1k
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
6.4 years ago
endrebak85
▴ 40
2
votes
2
replies
2.2k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
6.4 years ago
GENOMIC_region
• 0
0
votes
1
reply
1.1k
views
CNRegions gives error in IRanges Package
CNregions
iranges
iClusterPlus
6.5 years ago
sumonaray55
• 0
0
votes
2
replies
1.4k
views
VariantAnnotation::locateVariants error coming from XVector
variantannotation
xvector
iranges
6.5 years ago
Vivek.b
▴ 100
2
votes
5
replies
5.4k
views
unlist doesn't work for IRanges
iranges
updated 6.5 years ago by
James W. MacDonald
67k • written 6.5 years ago by
li lilingdu
▴ 450
1
vote
2
replies
1.7k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
g.k
• 0
0
votes
5
replies
1.8k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 6.7 years ago by
Nicolas Servant
▴ 260 • written 6.7 years ago by
René Wiegandt
• 0
0
votes
1
reply
1.5k
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa
iranges
updated 6.8 years ago by
UBod
▴ 300 • written 6.8 years ago by
mtorresp1975
• 0
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