Showing : Iranges • reset
0
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1.5k
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Error in export ifelse from IRanges
iranges ifelse package namespace export
updated 7.7 years ago by 68k • written 7.7 years ago by • 0
2
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2
replies
1.7k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment packages granges iranges
updated 7.8 years ago by ★ 29k • written 7.8 years ago by ▴ 60
1
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4
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3.1k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
0
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1
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1.4k
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Rcpp adding circular ranges to GRanges object in c++
GRanges circular rcpp IRanges
7.9 years ago hauken_heyken ▴ 80
4
votes
17
replies
4.2k
views
How to construct a valid GRanges object from RCPP and pass back to R
GRanges IRanges RCPP Constructor
updated 8.0 years ago by ▴ 10 • written 8.1 years ago by ▴ 80
0
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0
replies
1.1k
views
resize functions causes an error - "could not find function "unsafe.update"
genomicranges iranges resize
8.0 years ago Assa Yeroslaviz ★ 1.5k
7
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4
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2.7k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 8.0 years ago by 16k • written 8.0 years ago by ▴ 40
6
votes
6
replies
2.1k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 8.1 years ago by 16k • written 8.1 years ago by ▴ 20
0
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4
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1.5k
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Problem with IRanges and GenomicRanges
iranges genomicranges
updated 8.1 years ago by 16k • written 8.1 years ago by • 0
1
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4
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2.0k
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IRanges (GRanges): Inconsistent behaviour when overlapping ranges of width 0
Iranges granges
updated 8.1 years ago by 16k • written 8.1 years ago by ▴ 40
0
votes
3
replies
2.0k
views
Using IRanges to find gene TSS that overlap a window
iranges R granges
updated 8.2 years ago by • 0 • written 8.2 years ago by ▴ 20
0
votes
3
replies
2.5k
views
IRanges from BAM file to GRanges convert
iranges granges
8.2 years ago seungjoon.kim • 0
1
vote
1
reply
1.3k
views
Width in IRanges objects on "+" and "-" strand
iranges granges grangeslist
updated 8.2 years ago by ★ 11k • written 8.2 years ago by ▴ 10
0
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3
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1.1k
views
Irange _ Start and End
iranges
updated 8.2 years ago by ★ 11k • written 8.2 years ago by • 0
2
votes
2
replies
1.8k
views
Number of IRanges elements in TCGA HiSeqV2 dataset
r tcga recount iranges
updated 8.3 years ago by ★ 1.1k • written 8.3 years ago by ▴ 20
4
votes
2
replies
1.6k
views
trying to annotate overlaps with external file information
iranges granges
updated 8.4 years ago by ★ 11k • written 8.4 years ago by ▴ 50
0
votes
1
reply
1.7k
views
findOverlaps - how to get adjacent ranges?
findOverlaps IRanges
updated 8.5 years ago by ★ 11k • written 8.5 years ago by ▴ 20
17
votes
5
replies
4.8k
views
Combining RangedData objects is broken (IRanges 2.8.1 with R version 3.3.3 RC)
IRanges
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 20
0
votes
2
replies
928
views
About IRanges error
iranges
updated 8.6 years ago by 25k • written 8.6 years ago by • 0
0
votes
1
reply
1.8k
views
IRanges object from count matrix
genomicranges iranges featurecounts counts rnaseq
updated 8.6 years ago by 16k • written 8.6 years ago by ★ 1.5k
1
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4
replies
1.5k
views
pROBLEMS WITH findOverlapPairs
gRANGES iranges findoverlaps
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 30
2
votes
4
replies
1.8k
views
convert a sequence to Ranges object
iranges fasta split
updated 8.7 years ago by ★ 11k • written 8.7 years ago by ★ 1.5k
2
votes
4
replies
1.9k
views
plotting proteases digestion points in a protein
biostrings iranges sequence alignment protein
updated 8.7 years ago by ★ 11k • written 8.7 years ago by ★ 1.5k
0
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2
replies
1.6k
views
problem with makeGRangesListFromFeatureFragments
genomicranges iranges irangeslist grangeslist
updated 8.8 years ago by 4.2k • written 8.8 years ago by • 0
1
vote
12
replies
2.9k
views
How can I integrate set of compressedList in multiple list into one without duplication?
r iranges findoverlaps IntegerList List
9.2 years ago • updated 8.9 years ago jian_liangli • 0
2
votes
2
replies
1.5k
views
How to conditionally combine IntegerList in the DataFrame more elegantly?
r iranges integerlist DataFrame
updated 8.9 years ago by ▴ 80 • written 8.9 years ago by • 0
0
votes
2
replies
1.9k
views
replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 8.9 years ago by 25k • written 8.9 years ago by • 0
0
votes
5
replies
1.9k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges biostrings fasta protein readaastringset
updated 9.0 years ago by ★ 11k • written 9.0 years ago by ★ 1.5k
0
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1
reply
1.1k
views
error installing IRanges
software error iranges
updated 9.0 years ago by 25k • written 9.0 years ago by • 0
0
votes
2
replies
1.5k
views
Create VRanges object from mutation data (txt extracted from annotated vcf)
iranges variantannotation
updated 9.0 years ago by ★ 11k • written 9.0 years ago by • 0
2
votes
4
replies
1.6k
views
How to remove duplicated overlap hit index in IntegerList efficiently [solved] ?
r iranges integerlist
9.0 years ago Jurat Shahidin ▴ 80
0
votes
3
replies
2.2k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle granges iranges
9.0 years ago my4 ▴ 10
5
votes
5
replies
2.0k
views
How to extract out wanted IntegerList more elegantly from nested list?
r s4vectors integerlist iranges
updated 9.0 years ago by ★ 11k • written 9.0 years ago by • 0
2
votes
1
reply
1.2k
views
Question about parallel manipulation on CharacterList objects
s4vectors IRanges
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 450
0
votes
2
replies
1.3k
views
Negative width Not allowed with IRanges
iranges
updated 9.1 years ago by ★ 11k • written 9.1 years ago by • 0
5
votes
2
replies
1.9k
views
Using GRanges and IRanges to simply get all chromosome data
GRanges IRanges
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 30
0
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5
replies
2.8k
views
Problem installing XVector package
software error gcrma Xvector iranges
9.2 years ago • updated 9.1 years ago gary_smith • 0
2
votes
2
replies
1.5k
views
How to detect and replace zero index in IntegerList ?
iranges integerlist s4
9.2 years ago Jurat Shahidin ▴ 80
2
votes
2
replies
1.6k
views
How to coerce CompressedIntegerList as vector?
s4 coercion iranges integerlist
9.2 years ago jian_liangli • 0
1
vote
1
reply
1.0k
views
"duplicated" on LogicalList with fromLast = TRUE gives error
iranges
updated 9.2 years ago by ★ 11k • written 9.2 years ago by • 0
3
votes
3
replies
1.5k
views
Find hits of subject that start somewhere in the query by using GRanges / IRanges and findOverlap()
IRanges GRanges findoverlaps R
updated 9.2 years ago by ★ 11k • written 9.2 years ago by • 0
1
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3
replies
1.4k
views
Error trying to run "seqlm" example
seqlm IRanges R namespace dmr analysis
9.2 years ago calen.p.ryan • 0
0
votes
3
replies
1.3k
views
segfault for countOverlaps
genomicranges IRanges
9.3 years ago Stephen Cristiano • 0
1
vote
1
reply
2.1k
views
Behaviour of within in findOverlaps function in connection with maxgap parameter
IRanges genomicranges
updated 9.3 years ago by 16k • written 9.3 years ago by ▴ 10
6
votes
3
replies
3.4k
views
how does coverage() works
biostrings coverage rle iranges
9.4 years ago likeeatingpizza ▴ 10
5
votes
8
replies
3.1k
views
closest-features equivalent in Bioconductor for finding closest gene(s)
genomicranges granges iranges annotatepeak
updated 9.4 years ago by ★ 11k • written 9.4 years ago by ▴ 80
0
votes
1
reply
1.4k
views
Error message in makeTxDbFromGFF()
iranges genomicfeatures
updated 9.6 years ago by 43k • written 9.6 years ago by • 0
0
votes
1
reply
1.2k
views
Integer Overflow with IRanges
iranges r
updated 9.6 years ago by ★ 11k • written 9.6 years ago by • 0
10
votes
3
replies
11k
views
resize (shrink/expand) GenomicRanges
GenomicRanges IRanges
updated 9.6 years ago by 16k • written 9.6 years ago by ▴ 40
3
votes
5
replies
1.5k
views
IRanges start bigger than end
iranges
9.6 years ago vedran.franke • 0
275 results • Page 2 of 6
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That's a tricky issue! I've definitely seen similar behavior in differential exon usage analysis. It sounds like the normalization method J…
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Hi Dania, it looks like you're on the right track building your heatmap! It's great you've already filtered your data based on adjusted p-v…
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I got it working , thank you!!!
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It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
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Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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