Showing : dmrcate • reset
0
votes
1
reply
417
views
Filtering out non-variable probes from EPICv2 matrix
DMRcate EPICv2manifest
updated 4 months ago by 68k • written 5 months ago by • 0
0
votes
0
replies
405
views
Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma probe DMRcate GenomicRanges DifferentialMethylation
5 months ago jamiecatalano2 • 0
0
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4
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2.7k
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Significant DMRs in genes with no single significant CpG using limma
DMRcate
written 6.1 years ago by • 0
0
votes
1
reply
489
views
No preprocessing allowed for EPICv2 with DMRcate
missMethyl DMRcate
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
1
reply
1.6k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 9 months ago by • 0 • written 3.8 years ago by ▴ 60
2
votes
4
replies
802
views
Can we get beta values with DMRcate package
DMRcatedata DMRcate
9 months ago Melisa Tecik • 0
4
votes
8
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1.7k
views
how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
DMRcate minfi
10 months ago • updated 7 months ago xiaofeiwang198266 • 0
1
vote
2
replies
481
views
Limma Interaction Effect with Covariates
limma DMRcate
10 months ago kitzhu • 0
0
votes
0
replies
416
views
DMRcate pcutoff setting
EpicV2 DMRcate
11 months ago kitzhu • 0
4
votes
12
replies
5.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 14 months ago by ▴ 230 • written 22 months ago by ▴ 20
3
votes
2
replies
1.1k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 16 months ago by 53k • written 17 months ago by • 0
1
vote
2
replies
2.2k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 17 months ago by ▴ 230 • written 2.6 years ago by ▴ 10
0
votes
0
replies
614
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
18 months ago Macsue • 0
1
vote
2
replies
2.9k
views
EPIC array hg38 annotation?
minfi DMRcate
20 months ago • updated 19 months ago mycetes • 0
0
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0
replies
515
views
What is the significance of DMR in DMRcate
DMRcate
20 months ago chuanjiao6 • 0
3
votes
2
replies
722
views
Question about DMRcate
DMRcate dmrcate
20 months ago chuanjiao6 • 0
8
votes
7
replies
2.3k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 22 months ago by ▴ 30
0
votes
5
replies
1.2k
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 23 months ago by 68k • written 23 months ago by ▴ 10
0
votes
1
reply
1.2k
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 23 months ago by 4.2k • written 23 months ago by • 0
3
votes
4
replies
1.7k
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
2.0 years ago Jitendra ▴ 10
0
votes
1
reply
1.1k
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 2.1 years ago by ▴ 230 • written 2.1 years ago by • 0
2
votes
6
replies
1.9k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 2.4 years ago by ▴ 230 • written 2.4 years ago by • 0
6
votes
12
replies
3.0k
views
Error when loading DMRcate
DMRcate
2.6 years ago Bazingastats • 0
0
votes
0
replies
1.2k
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
2.6 years ago gilliangoobie • 0
2
votes
6
replies
2.7k
views
DMRcate
DMRcate R DMRcatedata Markdown
2.6 years ago yr542 • 0
0
votes
1
reply
1.3k
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 3.9 years ago by 68k • written 3.9 years ago by ▴ 30
0
votes
6
replies
1.9k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 4.2 years ago by ▴ 20 • written 5.2 years ago by ▴ 10
1
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2
replies
2.0k
views
DMRcate extractRanges error
DMRcate
4.6 years ago macsue.jacques ▴ 10
0
votes
0
replies
1.1k
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
4.9 years ago Mike ▴ 10
3
votes
4
replies
1.7k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 5.0 years ago by ▴ 230 • written 5.0 years ago by ▴ 10
0
votes
2
replies
1.2k
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
5.2 years ago zh9118 • 0
4
votes
9
replies
4.0k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 3.9 years ago by ▴ 30 • written 5.3 years ago by ▴ 10
1
vote
8
replies
3.0k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 5.4 years ago by ▴ 230 • written 5.4 years ago by ▴ 40
3
votes
5
replies
2.0k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 10
0
votes
2
replies
1.8k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 6.2 years ago by ▴ 290 • written 6.2 years ago by • 0
1
vote
3
replies
1.7k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 6.3 years ago by 68k • written 6.3 years ago by ▴ 10
2
votes
18
replies
6.8k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 7.2 years ago by • 0 • written 9.3 years ago by ▴ 160
0
votes
3
replies
2.2k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
7.2 years ago 574233829 • 0
2
votes
6
replies
2.6k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 7.4 years ago by ▴ 230 • written 7.4 years ago by • 0
0
votes
3
replies
2.5k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 8.3 years ago by ▴ 90 • written 8.3 years ago by • 0
1
vote
2
replies
2.1k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 8.3 years ago by ▴ 230 • written 8.3 years ago by • 0
1
vote
3
replies
1.9k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 8.5 years ago by 68k • written 8.5 years ago by ▴ 10
0
votes
11
replies
5.3k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 20 months ago by ▴ 230 • written 8.5 years ago by ★ 2.0k
1
vote
10
replies
3.9k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 8.5 years ago by ▴ 230 • written 8.6 years ago by ▴ 10
0
votes
1
reply
1.9k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 8.7 years ago by ▴ 230 • written 8.7 years ago by ▴ 10
0
votes
2
replies
1.9k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 8.7 years ago by ▴ 230 • written 8.7 years ago by • 0
1
vote
2
replies
1.5k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 8.7 years ago by ▴ 230 • written 8.7 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 8.7 years ago by ▴ 230 • written 8.7 years ago by • 0
0
votes
9
replies
22k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 8.7 years ago by ▴ 230 • written 8.9 years ago by • 0
1
vote
15
replies
3.2k
views
DMRcate results meanpvals
dmrcate
updated 9.2 years ago by ▴ 230 • written 9.3 years ago by ▴ 160
56 results • Page 1 of 2
Recent ...
Replies
Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups by Gordon Smyth 53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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