Showing : dmrcate • reset
0
votes
0
replies
73
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
16 days ago Macsue • 0
2
votes
6
replies
1.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 17 days ago by ▴ 170 • written 4 months ago by ▴ 10
0
votes
2
replies
431
views
EPIC array hg38 annotation?
minfi DMRcate
10 weeks ago • updated 9 weeks ago mycetes • 0
0
votes
0
replies
119
views
What is the significance of DMR in DMRcate
DMRcate
10 weeks ago chuanjiao6 • 0
3
votes
2
replies
253
views
Question about DMRcate
DMRcate dmrcate
11 weeks ago chuanjiao6 • 0
8
votes
7
replies
1.1k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 4 months ago by ▴ 30
0
votes
5
replies
582
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 5 months ago by 65k • written 5 months ago by ▴ 10
0
votes
1
reply
722
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 5 months ago by 3.8k • written 5 months ago by • 0
3
votes
4
replies
819
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
7 months ago • updated 6 months ago Jitendra ▴ 10
0
votes
1
reply
461
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 8 months ago by ▴ 170 • written 8 months ago by • 0
2
votes
6
replies
1.0k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 12 months ago by ▴ 170 • written 12 months ago by • 0
1
vote
1
reply
839
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 15 hours ago by ▴ 10 • written 13 months ago by ▴ 10
6
votes
12
replies
1.7k
views
Error when loading DMRcate
DMRcate
14 months ago Bazingastats • 0
0
votes
0
replies
611
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
14 months ago gilliangoobie • 0
2
votes
6
replies
1.7k
views
DMRcate
DMRcate R DMRcatedata Markdown
14 months ago yr542 • 0
0
votes
0
replies
820
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.3 years ago Ahdee ▴ 50
0
votes
1
reply
878
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 2.5 years ago by 65k • written 2.5 years ago by ▴ 30
0
votes
2
replies
936
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate WGBS biological_replicate
2.6 years ago xie186 • 0
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.8 years ago by ▴ 10 • written 3.8 years ago by ▴ 10
1
vote
2
replies
1.4k
views
DMRcate extractRanges error
DMRcate
3.1 years ago macsue.jacques ▴ 10
0
votes
0
replies
736
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
3.4 years ago Mike ▴ 10
3
votes
4
replies
1.0k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 3.6 years ago by ▴ 170 • written 3.6 years ago by ▴ 10
0
votes
2
replies
780
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
3.7 years ago zh9118 • 0
4
votes
9
replies
3.0k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 2.5 years ago by ▴ 30 • written 3.9 years ago by ▴ 10
1
vote
8
replies
1.8k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 3.9 years ago by ▴ 170 • written 3.9 years ago by ▴ 40
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 4.5 years ago by 65k • written 4.5 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 4.7 years ago by ▴ 170 • written 4.7 years ago by • 0
0
votes
2
replies
1.2k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 4.7 years ago by ▴ 270 • written 4.7 years ago by • 0
1
vote
3
replies
1.2k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
2
votes
18
replies
4.9k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 5.8 years ago by • 0 • written 7.9 years ago by ▴ 160
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
5.8 years ago 574233829 • 0
2
votes
6
replies
1.8k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 5.9 years ago by ▴ 170 • written 5.9 years ago by • 0
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.8 years ago by ▴ 90 • written 6.8 years ago by • 0
1
vote
2
replies
1.5k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 6.9 years ago by ▴ 170 • written 6.9 years ago by • 0
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 10
0
votes
11
replies
3.7k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 11 weeks ago by ▴ 170 • written 7.1 years ago by ★ 2.0k
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by ▴ 170 • written 7.1 years ago by ▴ 10
0
votes
1
reply
1.5k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 7.2 years ago by ▴ 170 • written 7.2 years ago by ▴ 10
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by • 0
1
vote
2
replies
1.1k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by ▴ 10
0
votes
1
reply
971
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by • 0
0
votes
9
replies
18k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 7.3 years ago by ▴ 170 • written 7.5 years ago by • 0
1
vote
15
replies
2.3k
views
DMRcate results meanpvals
dmrcate
updated 7.8 years ago by ▴ 170 • written 7.8 years ago by ▴ 160
0
votes
1
reply
968
views
conflicts in chromosome number
DMRcate
updated 7.8 years ago by ▴ 170 • written 7.8 years ago by • 0
2
votes
2
replies
1.6k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 8.3 years ago by ▴ 170 • written 8.3 years ago by • 0
0
votes
5
replies
2.1k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
8.4 years ago par.larsson • 0
2
votes
2
replies
2.4k
views
DMRcate cpg.annotate error
dmrcate design matrix
updated 8.4 years ago by ▴ 170 • written 8.4 years ago by ▴ 160
1
vote
1
reply
1.4k
views
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate
updated 8.7 years ago by ▴ 370 • written 8.7 years ago by • 0
0
votes
3
replies
3.1k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.0 years ago by ▴ 170 • written 9.0 years ago by ▴ 120
49 results • Page 1 of 1
Recent ...
Replies
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
Awards • All
Scholar to Robert Castelo ★ 3.2k
Popular Question to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Popular Question to BioinfGuru ▴ 30
Popular Question to Gordon Smyth 50k
Locations • All
United States, 2 minutes ago
France, 9 minutes ago
India, 47 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Ireland, 1 hour ago
Traffic: 460 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6