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Showing :
expressionset
•
reset
6
votes
7
replies
3.7k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
8.5 years ago
martin.hoelzer
▴ 20
3
votes
9
replies
1.4k
views
How many features an ExpressionSet can contain ?
ExpressionSet
22 months ago
OE
• 0
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase
expressionset
eset
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
andrew.birnberg
▴ 20
5
votes
2
replies
846
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 3.7 years ago by
Martin Morgan
25k • written 3.7 years ago by
cannin
▴ 20
2
votes
5
replies
3.9k
views
GSVA error - incomplete instalation?
GSVA
ExpressionSet
8.4 years ago
thrabe
• 0
3
votes
10
replies
2.3k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering
bioconductor
genesymbols
expressionset
9.1 years ago
svlachavas
▴ 830
1
vote
3
replies
2.2k
views
Log-Transform Values of eSet
expressionset
bioconductor
limma
geoquery
updated 7.5 years ago by
svlachavas
▴ 830 • written 7.5 years ago by
bi_Scholar
• 0
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet
caseControl
Correlation
Plot
updated 7.0 years ago by
vulegom
• 0 • written 7.2 years ago by
DataFanatic
▴ 10
3
votes
5
replies
1.6k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset
bioconductor
updated 7.6 years ago by
polemiraza
▴ 70 • written 7.6 years ago by
bi_Scholar
• 0
1
vote
2
replies
3.0k
views
how to update feature data with different dimensions in expressionSet?
biobase
eSet
expressionSet
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Guido Hooiveld
★ 3.9k
0
votes
1
reply
921
views
beadarray error conversion
beadarray
limma
ExpressionSet
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
emiliomastriani
• 0
0
votes
1
reply
1.2k
views
single probe represent multiple genes?
gcrma
microarray
expressionset
updated 7.2 years ago by
svlachavas
▴ 830 • written 7.2 years ago by
mathavanbioinfo
▴ 20
0
votes
1
reply
1.1k
views
Problem Subsetting ExpressionSet
expressionset
biobase
bioconductor
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Tom Oates
▴ 60
4
votes
3
replies
1.2k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays
expressionset
biobase
annotation
brainarray
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
lykhenko.olexandr
• 0
1
vote
10
replies
1.8k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
peirinl
• 0
1
vote
2
replies
221
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function
rma_function
ExpressionSet
MicroarrayData
affy
4 weeks ago
Mj.A.
• 0
2
votes
1
reply
3.1k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 8.7 years ago by
Aaron Lun
★ 28k • written 8.7 years ago by
philipp24
▴ 30
2
votes
4
replies
1.9k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset
limma
annotation
affymetrix microarrays
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
svlachavas
▴ 830
1
vote
2
replies
1.4k
views
How can I see that my samples is normalized or not?
Normalization
ExpressionSet
Series
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
vahideh
• 0
1
vote
1
reply
1.0k
views
Combining more than 2 ExpressionSets at the same time,
expressionset
combine
concatenate
combineTwoExpressionSet
8.0 years ago
g_draculla
▴ 10
0
votes
3
replies
2.5k
views
Annotation in ExpressionSet object
ExpressionSet
globaltest
7.9 years ago
NS
▴ 60
0
votes
1
reply
965
views
ExpressionSet: Internal Standard
expressionset
updated 7.9 years ago by
Steve Lianoglou
★ 13k • written 7.9 years ago by
Herbert Meyer
• 0
1
vote
1
reply
1.1k
views
Generating ExpressionSet Objects
r
expressionset
subseq
rnaseq
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
rrcutler
▴ 70
3
votes
2
replies
2.3k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo
GEOquery
ExpressionSet
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
salamandra
▴ 20
0
votes
1
reply
503
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
4.0 years ago
aush
▴ 40
4
votes
8
replies
2.2k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma
biobase
ExpressionSet
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
sa825
• 0
0
votes
1
reply
682
views
Calculations (averaging and normalization) with expressionset
RTCA
Biobase
Bioconductor
expressionset
updated 3.4 years ago by
James W. MacDonald
65k • written 3.4 years ago by
VanessaOak
• 0
8
votes
23
replies
858
views
Convert Seurat Object to Summarised Experiment or ExpressionSet
SummarizedExperiment
ExpressionSet
updated 15 days ago by
Robert Castelo
★ 3.3k • written 16 days ago by
Bine
▴ 40
0
votes
3
replies
2.1k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet
Assay
NanoString
Error
Data
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
junli1988
• 0
0
votes
2
replies
988
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
4.6 years ago
rezashiralmohammad
• 0
0
votes
0
replies
969
views
Error in building expression set for ArrayExpress
microarray
expressionset
arrayexpress
bioconductor
r
6.1 years ago
rf
• 0
0
votes
0
replies
855
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr
expressionset
5.8 years ago
jirkanov
• 0
0
votes
0
replies
726
views
Computing se.exprs in R for an Expressionset?
microarray
Expressionset
se.exprs
5.7 years ago
payam_delfani1980
• 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.3 years ago
gabor.halasz
• 0
0
votes
1
reply
1.4k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
7.2 years ago
andreas.pittroff
• 0
0
votes
0
replies
1.3k
views
Export expressionSet to ArrayExpress "processed data"
expressionset
simpleaffy
arrayexpress
tsv
7.7 years ago
Steffen Neumann
▴ 30
36 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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