Showing : ggplot2 • reset
0
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1.5k
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Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 5 months ago by 65k • written 5 months ago by • 0
1
vote
5
replies
613
views
Mixed up sample info with plotPCA
plotMA ggplot2 plotPCA DESeq2
updated 6 months ago by 41k • written 6 months ago by • 0
5
votes
11
replies
2.9k
views
Visualization of negative log CPM values
Visualization Normalization ggplot2 edgeR
written 11 months ago by ▴ 20
0
votes
1
reply
561
views
How to add pvalue to boxplot?
boxplot ggplot2
updated 14 months ago by ★ 4.0k • written 14 months ago by ▴ 10
0
votes
0
replies
939
views
GOplots::GOChord with heatmaps?
GOChord ggplot2::geom_polygon() GOplot ggplot2
15 months ago adrija.kalvisa • 0
0
votes
2
replies
854
views
ggplot2 bar plot
R Visualization ggplot2
18 months ago Jitendra ▴ 10
4
votes
6
replies
1.4k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
23 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
1.4k
views
Adjust color of ellipse in PCA plot from DESeq2 data set
stat_ellipse DESeq2 ggplot2
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
0
votes
3
replies
2.5k
views
ggplot labels with linebreaks inn ggvenn venn diagram
ggvenn ggplot2
3.6 years ago anders.tondell ▴ 30
0
votes
4
replies
3.9k
views
ggplot2 of PCA
software error ggplot2
updated 3.8 years ago by • 0 • written 3.9 years ago by ▴ 20
0
votes
2
replies
1.8k
views
How to adjust and align timepoints on x-axis in the ggplot2
ggplot2 line plot x-axis data frame R
4.4 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
694
views
Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
4.5 years ago sheneicechang • 0
0
votes
0
replies
686
views
Unable to obtain the line chart with error envelop in ggplot2 and geom_ribbon()
ggplot2 line chart R geom_ribbon()
4.6 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
651
views
How to plot "chromosomewise" "allele frequency" of a "Hybrid" in comparison to its "Inbred parents"
ggplot2 ggplot cmplot
5.1 years ago gens8094 • 0
0
votes
0
replies
641
views
How to plot "chromosomewise" "allele frequency" of a "Hybrid" in comparison to its "Inbred parents"
ggplot cmplot ggplot2
5.1 years ago gens8094 • 0
2
votes
5
replies
3.8k
views
Adding labels on clusters in a t-SNE plot and changing colors
scran scater Rtsne ggplot2 scRNA-Seq
updated 20 months ago by ▴ 60 • written 5.2 years ago by ▴ 50
0
votes
0
replies
1.2k
views
vcf to venn diagram
snps vcf venn diagram ggplot2
5.3 years ago mictadlo ▴ 10
0
votes
1
reply
861
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 5.4 years ago by 65k • written 5.4 years ago by ▴ 10
1
vote
2
replies
1.6k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
5.4 years ago t.fadason ▴ 10
2
votes
2
replies
958
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
5.6 years ago Lescai, Francesco ▴ 380
0
votes
1
reply
1.0k
views
display of chromosomes (on the linear scale) and translocations
ggviz ggplot2 gviz circlize Rcircos
5.8 years ago • updated 5.7 years ago Bogdan ▴ 670
0
votes
0
replies
1.8k
views
ggbio Error: Don't know how to add o to a plot
software error ggbio ggplot2
5.8 years ago zhe ▴ 20
0
votes
2
replies
3.0k
views
Add annotation color bar to ggplot
ggplot2 annotation
updated 6.0 years ago by ▴ 200 • written 6.0 years ago by ▴ 30
5
votes
12
replies
10k
views
Combining ComplexHeatmap with other plot types
complexheatmap ggplot2
updated 6.4 years ago by ▴ 260 • written 6.4 years ago by ▴ 10
3
votes
4
replies
3.4k
views
saving a plot as png and also showing inside Rstudio
edger ggplot2
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 10
6
votes
2
replies
6.3k
views
How is it possible to get a legend outside plotMDS?
edger ggplot2
updated 6.5 years ago by 65k • written 6.5 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Pseudo-coloring DiffBind volcano plot
diffbind chipseq volcanoplot ggplot2
updated 6.5 years ago by ★ 5.2k • written 6.6 years ago by ▴ 60
2
votes
3
replies
2.1k
views
MA plot DiffBind in ggplot2
diffbind ggplot2 r chipseq
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by • 0
2
votes
0
replies
1.9k
views
Gviz plot combined with multiple ggplot2 plots
gviz gviz-package ggplot2
6.7 years ago christian.aichmueller ▴ 20
1
vote
3
replies
1.9k
views
Error bars on DESeq2 visuals
deseq2 metagenomics phyloseq ggplot2
6.7 years ago lauren.czaplicki • 0
0
votes
2
replies
1.4k
views
ggplots gives errors
rnaseq ggplot2
updated 6.7 years ago by ▴ 20 • written 6.7 years ago by • 0
5
votes
3
replies
1.5k
views
Using BiocStyle with plotly
biocstyle plotly ggplot2
updated 6.8 years ago by ▴ 750 • written 6.8 years ago by ▴ 730
2
votes
2
replies
4.3k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.0 years ago • updated 3.4 years ago tcalvo ▴ 90
0
votes
1
reply
3.3k
views
an error in ggbio: "Breaks and labels are different lengths"
ggbio ggplot2
7.0 years ago Bogdan ▴ 670
0
votes
1
reply
2.0k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree ggplot2 phyloseq geom_boxplot facet_plot
updated 7.1 years ago by ★ 1.2k • written 7.1 years ago by • 0
0
votes
2
replies
1.8k
views
Controlling colours assigned to order in DeSeq2 plot in phyloseq
phyloseq color ggplot2
updated 7.1 years ago by 41k • written 7.2 years ago by • 0
0
votes
1
reply
1.3k
views
Metagene: file import and aesthetic customization
metagene R ggplot2
updated 7.2 years ago by ▴ 170 • written 7.2 years ago by ▴ 40
1
vote
3
replies
2.8k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
0
votes
5
replies
1.4k
views
How to plot benchmark result of R/ Bioconductor package (getting curve or line graph)?
r benchmark performance ggplot2
7.3 years ago Jurat Shahidin ▴ 80
0
votes
0
replies
1.6k
views
Select what conditionsto graph in Report tools with Deseq containing multiple conditions
deseq2 ggplot2 reportingtools
7.5 years ago abass.conteh • 0
0
votes
1
reply
955
views
Building a pseudo-network based on correlations
R ggplot2
updated 7.5 years ago by ▴ 20 • written 7.5 years ago by ▴ 20
0
votes
2
replies
1.4k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio ggplot2 title typography
7.6 years ago • updated 7.3 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
2.0k
views
Missing levels in legend using autoplot () + scale_color_manual () functions
ggbio ggplot2 legend bioconductor karyiogram
7.6 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
1.6k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
2
votes
2
replies
1.3k
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 7.8 years ago by ▴ 130 • written 7.8 years ago by ▴ 10
0
votes
1
reply
2.4k
views
Ideogram not alligned with ggbio and tracks()
ggbio ggplot2
updated 7.6 years ago by ▴ 10 • written 8.0 years ago by ▴ 10
0
votes
2
replies
1.8k
views
displaying UP, DOWN, and NON-regulated genes
ggplot2
8.2 years ago Bogdan ▴ 670
1
vote
1
reply
1.5k
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 8.2 years ago by 65k • written 8.2 years ago by ▴ 50
50 results • Page 1 of 1
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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