Showing : ggplot2 • reset
5
votes
12
replies
10k
views
Combining ComplexHeatmap with other plot types
complexheatmap ggplot2
updated 6.4 years ago by ▴ 260 • written 6.4 years ago by ▴ 10
5
votes
11
replies
3.0k
views
Visualization of negative log CPM values
Visualization Normalization ggplot2 edgeR
written 11 months ago by ▴ 20
0
votes
7
replies
1.5k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 5 months ago by 65k • written 5 months ago by • 0
12
votes
7
replies
4.4k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 4.7 years ago by ★ 1.5k • written 8.9 years ago by ▴ 370
4
votes
6
replies
1.4k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
23 months ago mohammedtoufiq91 ▴ 10
2
votes
5
replies
3.8k
views
Adding labels on clusters in a t-SNE plot and changing colors
scran scater Rtsne ggplot2 scRNA-Seq
updated 20 months ago by ▴ 60 • written 5.2 years ago by ▴ 50
0
votes
5
replies
1.4k
views
How to plot benchmark result of R/ Bioconductor package (getting curve or line graph)?
r benchmark performance ggplot2
7.3 years ago Jurat Shahidin ▴ 80
1
vote
5
replies
613
views
Mixed up sample info with plotPCA
plotMA ggplot2 plotPCA DESeq2
updated 6 months ago by 41k • written 6 months ago by • 0
1
vote
4
replies
2.4k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio ggplot2 autoplot bioconductor gene models
updated 8.3 years ago by ▴ 10 • written 8.3 years ago by ▴ 10
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
3
votes
4
replies
3.4k
views
saving a plot as png and also showing inside Rstudio
edger ggplot2
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 10
3
votes
4
replies
2.7k
views
Bioconductor vignette on Time course experiments only describes how to plot the the gene with the smallest p-value. How can I plot specific genes of …
timecourse time course rna-seq deseq2 ggplot2
8.6 years ago moldach ▴ 20
0
votes
4
replies
3.9k
views
ggplot2 of PCA
software error ggplot2
updated 3.8 years ago by • 0 • written 3.9 years ago by ▴ 20
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
2
votes
3
replies
2.1k
views
MA plot DiffBind in ggplot2
diffbind ggplot2 r chipseq
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by • 0
0
votes
3
replies
2.5k
views
ggplot labels with linebreaks inn ggvenn venn diagram
ggvenn ggplot2
3.6 years ago anders.tondell ▴ 30
5
votes
3
replies
1.5k
views
Using BiocStyle with plotly
biocstyle plotly ggplot2
updated 6.8 years ago by ▴ 750 • written 6.8 years ago by ▴ 730
1
vote
3
replies
2.8k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
1
vote
3
replies
1.9k
views
Error bars on DESeq2 visuals
deseq2 metagenomics phyloseq ggplot2
6.7 years ago lauren.czaplicki • 0
0
votes
2
replies
1.6k
views
error when using seeFastqPlot
systempiper seeFastqPlot software error ggplot2 geom_histogram
updated 8.3 years ago by ★ 1.7k • written 8.3 years ago by • 0
0
votes
2
replies
3.0k
views
Add annotation color bar to ggplot
ggplot2 annotation
updated 6.0 years ago by ▴ 200 • written 6.0 years ago by ▴ 30
2
votes
2
replies
3.1k
views
cummeRbund change point size in volcano plot
cummerbund ggplot2 size r volcanoplot
updated 9.4 years ago by 65k • written 9.4 years ago by ▴ 20
2
votes
2
replies
959
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
5.6 years ago Lescai, Francesco ▴ 380
1
vote
2
replies
1.6k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
5.4 years ago t.fadason ▴ 10
0
votes
2
replies
1.8k
views
displaying UP, DOWN, and NON-regulated genes
ggplot2
8.2 years ago Bogdan ▴ 670
0
votes
2
replies
856
views
ggplot2 bar plot
R Visualization ggplot2
18 months ago Jitendra ▴ 10
0
votes
2
replies
1.8k
views
How to adjust and align timepoints on x-axis in the ggplot2
ggplot2 line plot x-axis data frame R
4.4 years ago mohammedtoufiq91 ▴ 10
0
votes
2
replies
2.9k
views
barplot with ggplot2 for gene expression
ggplot2 barplot gene expression gene expression
updated 8.7 years ago by 65k • written 8.7 years ago by ▴ 130
2
votes
2
replies
1.3k
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 7.8 years ago by ▴ 130 • written 7.8 years ago by ▴ 10
1
vote
2
replies
2.7k
views
gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 8.9 years ago by ▴ 180 • written 8.9 years ago by ▴ 130
0
votes
2
replies
1.4k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio ggplot2 title typography
7.6 years ago • updated 7.3 years ago oswaldo.lorenzo ▴ 10
0
votes
2
replies
1.8k
views
Controlling colours assigned to order in DeSeq2 plot in phyloseq
phyloseq color ggplot2
updated 7.2 years ago by 41k • written 7.2 years ago by • 0
2
votes
2
replies
4.3k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.0 years ago • updated 3.4 years ago tcalvo ▴ 90
0
votes
2
replies
1.4k
views
ggplots gives errors
rnaseq ggplot2
updated 6.7 years ago by ▴ 20 • written 6.7 years ago by • 0
6
votes
2
replies
6.3k
views
How is it possible to get a legend outside plotMDS?
edger ggplot2
updated 6.5 years ago by 65k • written 6.5 years ago by ▴ 10
0
votes
1
reply
1.4k
views
Adjust color of ellipse in PCA plot from DESeq2 data set
stat_ellipse DESeq2 ggplot2
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
0
votes
1
reply
1.5k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r ggbio ggplot2 dnaseq genomicranges
updated 8.8 years ago by ▴ 130 • written 8.8 years ago by • 0
0
votes
1
reply
1.4k
views
ggbio package only works with h19 genome
ggbio ggplot2
updated 8.5 years ago by 65k • written 8.5 years ago by ▴ 10
1
vote
1
reply
1.8k
views
ggplot2 functions not inheriting?
ggplot2
8.3 years ago andrew.j.skelton73 ▴ 370
1
vote
1
reply
1.5k
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 8.3 years ago by 65k • written 8.3 years ago by ▴ 50
0
votes
1
reply
2.4k
views
Ideogram not alligned with ggbio and tracks()
ggbio ggplot2
updated 7.6 years ago by ▴ 10 • written 8.0 years ago by ▴ 10
1
vote
1
reply
1.6k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
2.0k
views
Missing levels in legend using autoplot () + scale_color_manual () functions
ggbio ggplot2 legend bioconductor karyiogram
7.6 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
1.3k
views
Metagene: file import and aesthetic customization
metagene R ggplot2
updated 7.2 years ago by ▴ 170 • written 7.2 years ago by ▴ 40
0
votes
1
reply
2.0k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree ggplot2 phyloseq geom_boxplot facet_plot
updated 7.1 years ago by ★ 1.2k • written 7.1 years ago by • 0
0
votes
1
reply
3.3k
views
an error in ggbio: "Breaks and labels are different lengths"
ggbio ggplot2
7.1 years ago Bogdan ▴ 670
0
votes
1
reply
1.0k
views
Pseudo-coloring DiffBind volcano plot
diffbind chipseq volcanoplot ggplot2
updated 6.5 years ago by ★ 5.2k • written 6.6 years ago by ▴ 60
0
votes
1
reply
1.0k
views
display of chromosomes (on the linear scale) and translocations
ggviz ggplot2 gviz circlize Rcircos
5.8 years ago Bogdan ▴ 670
0
votes
1
reply
863
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 5.4 years ago by 65k • written 5.4 years ago by ▴ 10
0
votes
1
reply
695
views
Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
4.5 years ago sheneicechang • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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