Showing : mirna • reset
1
vote
4
replies
665
views
controling for batch effect while preserving variation within repeated measures that unevenly distributed across batches
miRNA BatchEffect RNASeq limma
6 months ago Wending • 0
1
vote
4
replies
714
views
How to annotate mir4.1 arrays?
AffymetrixChip miRNA oligo
12 months ago • updated 9 months ago richardallenfriedmanbrooklyn ▴ 20
1
vote
1
reply
790
views
Library sizes of miRNA sequencing data and TMM normalization with Edge-R
edgeR SequencingData miRNA TMM Normalization
updated 15 months ago by 50k • written 15 months ago by • 0
6
votes
6
replies
1.5k
views
Too many differentially expressed miRNA with limma
limma miRNA Microarray
18 months ago Sara ▴ 10
1
vote
3
replies
1.7k
views
miRNA differential expression analysis - treat as transcript level?
tximport DESeq2 edgeR swish miRNA
updated 23 months ago by 42k • written 23 months ago by • 0
0
votes
1
reply
597
views
miRNA analysis with DESeq2
mirna DESeq2
updated 2.0 years ago by 42k • written 2.0 years ago by • 0
2
votes
2
replies
963
views
edgeR: How to display/plot individual miRNAs found to be differentialy expressed?
miRNAData miRNA DifferentialExpression edgeR
2.0 years ago Sarah • 0
0
votes
3
replies
859
views
DESEQ PCA
DESeq2 miRNA
updated 2.7 years ago by ★ 1.4k • written 2.8 years ago by • 0
0
votes
1
reply
895
views
How to calculate high and low tumor mutational burden
SomaticMutation miRNA
updated 3.0 years ago by ★ 4.1k • written 3.0 years ago by ▴ 20
0
votes
1
reply
1.4k
views
edgeR on microRNA data
miRNA edgeR miRNA edgeR
updated 3.0 years ago by 50k • written 12.6 years ago by ▴ 50
6
votes
11
replies
2.6k
views
edgeR on microRNA data
microRNA edgeR miRNA
12.6 years ago • updated 3.0 years ago Gordon Smyth 50k
3
votes
6
replies
4.5k
views
Affymetrix miRNA 4.0 Normalization and Analysis
R Limma microarray miRNA
updated 3.0 years ago by ▴ 10 • written 8.3 years ago by ▴ 90
0
votes
1
reply
843
views
mircomb analysis from deg's list
mircomb mrna mirna degs interaction
3.9 years ago andreia ▴ 10
6
votes
4
replies
2.6k
views
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray mirna oligo package pdinfobuilder pd.mirna
updated 4.5 years ago by ▴ 10 • written 7.0 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Very high threshold for independent filtering
deseq2 mirna independent filtering
updated 5.2 years ago by 42k • written 5.2 years ago by • 0
0
votes
5
replies
1.4k
views
Hill shape p-value histogram after differential miRNA expression analysis with DESeq2
deseq2 mirna fdrtool
updated 5.3 years ago by ★ 3.3k • written 5.3 years ago by • 0
1
vote
8
replies
2.5k
views
Trying to map nucleotide position from a transcript to genomic location
genomicfeatures mapfromtranscripts mirna
updated 5.7 years ago by ★ 6.8k • written 5.7 years ago by ▴ 20
1
vote
2
replies
1.1k
views
Whether "read_counts_miRNA" or "reads_per_million_miRNA" to use for DE expression analysis using DeSeq2
tcgadownload deseq2 mirna normalization
updated 5.9 years ago by ▴ 120 • written 5.9 years ago by • 0
0
votes
0
replies
1.2k
views
miR2Pathway Finite Observations
pathway analysis mirna parallel
6.2 years ago genomic8328 ▴ 10
2
votes
0
replies
1.2k
views
Job: PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna riboseq smallrna differential gene expression Job
6.2 years ago Andy Lynch ▴ 120
0
votes
1
reply
1.3k
views
Best way to analyze multiple treatments using DESeq2?
deseq2 rna-seq mirna
updated 6.2 years ago by 42k • written 6.2 years ago by • 0
0
votes
0
replies
1.2k
views
Custom graphNEL object for pathview
pathview mirintegrator miRNA
6.6 years ago drowsygoat ▴ 30
4
votes
3
replies
3.8k
views
EdgeR on miRNA data
edger miRNA
updated 7.1 years ago by ★ 28k • written 7.1 years ago by • 0
0
votes
4
replies
4.5k
views
miRNA-seq data analysis
miRNA mirna-seq
updated 7.2 years ago by ▴ 250 • written 7.2 years ago by • 0
0
votes
0
replies
1.6k
views
miRNA target prediction tool(package) using R
mirna prediction target
7.2 years ago Adam • 0
1
vote
1
reply
1.0k
views
miRNA normalization for large amount of samples using LVSmiRNA
mirna normalization
7.6 years ago • updated 7.4 years ago carleshf ▴ 10
2
votes
5
replies
1.7k
views
miRNA Probe IDs
mirna microarray mirbase.db
updated 7.6 years ago by ★ 1.5k • written 7.6 years ago by • 0
1
vote
2
replies
1.8k
views
Rsubread align for miRNAseq?
rsubread miRNA
updated 7.6 years ago by ★ 3.6k • written 7.6 years ago by ▴ 620
0
votes
2
replies
963
views
Differential expression of one group agains all samples
deseq2 mirna differential gene expression
updated 7.6 years ago by ▴ 680 • written 7.6 years ago by ▴ 10
0
votes
2
replies
2.1k
views
TPM for miRNA tags
mirna
7.6 years ago manoharankumar01 • 0
0
votes
0
replies
1.3k
views
Normalizing miRNA-1_0 and miRNA-1_0_2Xgain type arrays simultaneously
mirna microarray normalization
7.7 years ago arisarkar88 ▴ 40
4
votes
6
replies
2.8k
views
limma: within-array duplicates correlation
limma mirna microarray
updated 8.3 years ago by ★ 28k • written 8.3 years ago by • 0
0
votes
0
replies
1.4k
views
get precursor mirna from mature mirna
bioconductor mirna mir mirbase.db
8.4 years ago C T ▴ 140
3
votes
4
replies
1.9k
views
Network generation from adjacency matrix of zeroes and ones
R adjacency matrix mirna
8.4 years ago alptaciroglu ▴ 50
0
votes
0
replies
1.5k
views
miRNA 3D-Gene chips Toray
Toray 3D-Gene miRNA limma
8.6 years ago santi.cabellos ▴ 10
0
votes
0
replies
1.0k
views
targetScan R errors
targetscan R error handling miRNA
8.6 years ago alptaciroglu ▴ 50
1
vote
5
replies
1.6k
views
normalization of a miRNA microarray
normalization vsn eximir microarray miRNA
updated 8.7 years ago by ★ 13k • written 8.7 years ago by ▴ 50
1
vote
1
reply
1.2k
views
How can get the GO and KEGG miRNA microarray Agilent?
go kegg limma microarray mirna
8.7 years ago santi.cabellos ▴ 10
2
votes
5
replies
2.0k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by ▴ 10
4
votes
2
replies
2.3k
views
Detect global differences in miRNA expression between tumor and normal using spike-ins
edger limma mirna sequencing
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 40
2
votes
5
replies
3.0k
views
miRNA expression analysis : annotation
miRNA annotation affymetrixchip
9.1 years ago aswathym ▴ 10
0
votes
0
replies
1.0k
views
Invitation Research Collaborations
cancer microarray mirna sequencing
9.1 years ago alexandru.floares • 0
0
votes
0
replies
1.8k
views
News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
9.4 years ago raffaele calogero ▴ 500
6
votes
2
replies
1.9k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 9.7 years ago by 50k • written 9.8 years ago by ★ 13k
3
votes
1
reply
1.3k
views
Bioinformatics researching Schizophrenia
miRNA
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ★ 13k
0
votes
5
replies
2.0k
views
Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by ★ 13k
0
votes
0
replies
4.1k
views
cpm cutoff (edgeR) [was: total count filter cutoff (edgeR)]
Sequencing miRNA edgeR Sequencing miRNA edgeR
9.9 years ago Gordon Smyth 50k
0
votes
0
replies
1.1k
views
total count filter cutoff (edgeR)
miRNA edgeR miRNA edgeR
9.9 years ago Daniel ▴ 10
0
votes
0
replies
1.3k
views
QuasR for miRNA
miRNA QuasR miRNA QuasR
10.0 years ago Michael Stadler ▴ 350
0
votes
4
replies
1.6k
views
combat error message
miRNA Normalization affy miRNA Normalization affy
updated 10.0 years ago by ★ 13k • written 10.0 years ago by ▴ 850
50 results • Page 1 of 1
Recent ...
Replies
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards • All
Popular Question to landenshanie ▴ 40
Popular Question to minardsmitha ▴ 10
Teacher to Vincent J. Carey, Jr. 6.7k
Popular Question to Mike • -60
Popular Question to shepherl 3.9k
Locations • All
United States, 38 minutes ago
Melbourne, Australia, 1 hour ago
France, 1 hour ago
United States, 1 hour ago
United States, 1 hour ago
Traffic: 547 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6