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News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
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News: List of Deprecated Packages for Bioc3.19
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11 weeks ago • updated 24 days ago shepherl 3.9k
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Estimating Cell Counts for EPIC V2 array data
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DEseq2 coefficient
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Cannot connect to ExperimentHub server
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6 months ago • updated 25 days ago shepherl 3.9k
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SingleR Label.Ont
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
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Query regarding phyloseq object construct with QIIME output
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler RNASeq
updated 24 days ago by ★ 1.2k • written 14 months ago by ▴ 10
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DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
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Which input file is used for DGEList in EgdeR?
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How to use spike-in information (sequences from another species) with DESeq2::DESeq()
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using WGCNA, positive or negative corrlation between genes composing modules.
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Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
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ChipQC 'names' attribute [9] must be the same length as the vector [2]'
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DESeq2 a lot of genes showing up as differentially expressed that only have 1 sample with any expression
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Ensembl plants at annotationHub?
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
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Job: Post Doctoral position in AI (Deep learning / Machine learning) approaches for Cancer Research, MRC Cancer Unit, University of Cambridge, UK
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DNAString: Standard checksum function?
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189 results • Page 4 of 4
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
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