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error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
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Which input file is used for DGEList in EgdeR?
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biomaRt has encountered an unknown server error.
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How to access the C++ code of the function .cxx_ave_log_cpm in the aveLogCPM.default function of EdgeR package?
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10 months ago Josué ▴ 20
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create COMPOUND dataset (2 matrices) with rhdf5?
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3 months ago baptiste ▴ 20
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What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
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threshold to filter lowly expressed genes
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Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
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updated 17 days ago by 65k • written 2.3 years ago by • 0
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6 months ago kjngo ▴ 40
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3 months ago • updated 12 weeks ago pl23 • 0
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4
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should statmod be a dependency of limma and not a suggests?
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updated 9 months ago by 50k • written 8.0 years ago by • 0
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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