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13
votes
35
replies
16k
views
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice
david
updated 5.8 years ago by
gevermalc
• 0 • written 8.8 years ago by
Vivek.b
▴ 100
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 4 weeks ago
shepherl
3.9k
0
votes
17
replies
2.6k
views
Defining Weights in marrayNorm.
Microarray
Microarray
updated 20.8 years ago by
Yuk Fai Leung
▴ 100 • written 20.8 years ago by
Josef Walker
▴ 20
0
votes
20
replies
5.2k
views
ttest or fold change
updated 20.4 years ago by
Garrett Frampton
▴ 20 • written 20.4 years ago by
Jason Hipp
▴ 40
2
votes
27
replies
4.0k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.6 years ago • updated 8.5 years ago
alexgraehl
▴ 20
0
votes
18
replies
3.7k
views
Genbank to Unigene IDs
annotate
AnnBuilder
annotate
AnnBuilder
updated 20.1 years ago by
Kane, David
▴ 10 • written 20.1 years ago by
Gordon Smyth
50k
0
votes
22
replies
3.1k
views
'x' has "out of limits" views ,Issue with the file size!! Compareequence function is not working
compilation error
filesize
bioconductor
6.8 years ago • updated 6.7 years ago
susobhanbaidya
• 0
0
votes
13
replies
2.5k
views
two color arrays normalization
limma
limma
updated 15.2 years ago by
Jenny Drnevich
★ 2.0k • written 15.3 years ago by
Giusy Della Gatta
▴ 110
1
vote
16
replies
3.7k
views
Error: could not find function "dba"
software error
diffbind
dba
7.5 years ago
mmarins
• 0
8
votes
17
replies
15k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 8.7 years ago by
mh.manoj
• 0 • written 9.2 years ago by
brohawndg
▴ 150
1
vote
24
replies
4.9k
views
GenomicAlignments - extracting sequence signatures from bam file
bam file
HIV
cytosine
6.6 years ago
achaillon
• 0
11
votes
25
replies
11k
views
readCufflinks problem with extdata
cummerbund
updated 6.6 years ago by
markus.ball
▴ 10 • written 6.9 years ago by
biakemi
▴ 40
1
vote
12
replies
3.2k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 9.5 years ago by
drsuuzzz
• 0 • written 9.6 years ago by
alessandro brozzi
▴ 120
0
votes
16
replies
2.6k
views
Finding GO leaf nodes for an ontology - which package?
updated 16.8 years ago by
Seth Falcon
★ 7.4k • written 16.8 years ago by
Tim Smith
★ 1.1k
0
votes
27
replies
2.8k
views
summarizeOverlaps mode ignoring inter feature overlaps
11.1 years ago
Thomas Girke
★ 1.7k
0
votes
10
replies
2.0k
views
ABPkgBuilder Error;
18.8 years ago
Barry Henderson
▴ 250
2
votes
12
replies
2.5k
views
I want to order genes in GO groups
gene ontology
genefilter
updated 8.7 years ago by
b.nota
▴ 360 • written 8.7 years ago by
kanacska
▴ 10
4
votes
21
replies
3.5k
views
RMA normaliztion using XPS
normalization
xps
updated 9.1 years ago by
cstrato
★ 3.9k • written 9.1 years ago by
dhwani.dholakia
• 0
0
votes
16
replies
2.6k
views
Affy: Present calls in an eset
updated 20.6 years ago by
Stephen Henderson
★ 1.0k • written 20.6 years ago by
Arne.Muller@aventis.com
▴ 620
3
votes
12
replies
3.9k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 6.7 years ago by
Thomas Carroll
▴ 420 • written 9.2 years ago by
atisou
• 0
2
votes
15
replies
3.1k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.1 years ago • updated 9.0 years ago
mnaymik
▴ 10
1
vote
21
replies
3.5k
views
Rsubread stopping half-way through align
rsubread
7.9 years ago • updated 7.7 years ago
Campbell.1933
• 0
4
votes
15
replies
3.1k
views
Converting Synapter object output into a MSnbase-compatible object
synapter
msnbase
8.8 years ago • updated 8.6 years ago
diana.schreier
• 0
0
votes
10
replies
2.8k
views
read.GenePix not opening connection
Microarray
marray
Microarray
marray
updated 18.9 years ago by
Tony Kowal
▴ 20 • written 18.9 years ago by
Amy Mikhail
▴ 460
0
votes
12
replies
2.1k
views
KEGGSOAP
KEGGSOAP
KEGGSOAP
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Dr.Mayhaus Manuel
▴ 30
6
votes
22
replies
4.0k
views
Oligo package: paCalls questions
microarray
oligo
updated 9.0 years ago by
cstrato
★ 3.9k • written 9.0 years ago by
whyuen
▴ 20
0
votes
17
replies
2.2k
views
Coverage by base
Coverage
Coverage
12.6 years ago
rohan bareja
▴ 200
1
vote
13
replies
5.7k
views
ERROR: dependency 'GO.db' is not available for package 'systemPipeR'
software error
7.8 years ago
phpaul2010
• 0
0
votes
10
replies
2.3k
views
how to revert to an older limma version?
16.9 years ago • updated 16.8 years ago
Maya Bercovich
▴ 50
0
votes
8
replies
1.6k
views
uppercase & lowercase
updated 17.0 years ago by
Saroj Mohapatra
▴ 450 • written 17.0 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
8
replies
4.3k
views
GSVA: problem with chip annotation
gsva
updated 9.5 years ago by
Robert Castelo
★ 3.3k • written 9.5 years ago by
q017mm
• 0
0
votes
21
replies
5.2k
views
unable to readImage using EBImage package
EBImage
EBImage
updated 12.1 years ago by
Nurdiyanah Jambari
▴ 90 • written 12.2 years ago by
Guest User
★ 13k
0
votes
13
replies
5.9k
views
gage pathways enrichment analysis
gage
pathways
kegg
updated 9.5 years ago by
Luo Weijun
★ 1.6k • written 9.5 years ago by
francesca.defilippis
▴ 100
0
votes
11
replies
6.3k
views
ChAMP input: Beta Matrix?
champ
dmr analysis
updated 3.4 years ago by
坤
• 0 • written 8.2 years ago by
Shicheng Guo
• 0
0
votes
14
replies
2.5k
views
got 0 significant differential bound (DB)
diffbind
7.0 years ago • updated 6.9 years ago
mforoo1
• 0
0
votes
12
replies
3.3k
views
testing GO categories with Fisher's exact test.
GO
Category
GO
Category
updated 20.2 years ago by
James W. MacDonald
65k • written 20.2 years ago by
Nicholas Lewin-Koh
▴ 430
0
votes
11
replies
2.0k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
VariantAnnotation
Annotation
VariantAnnotation
VariantTools
VariantAnnotation
Annotation
updated 10.4 years ago by
Valerie Obenchain
★ 6.8k • written 10.4 years ago by
Thomas Girke
★ 1.7k
0
votes
10
replies
2.4k
views
Getting rawdata for TMM normalization
normalization
7.9 years ago
humberto_munoz
• 0
5
votes
14
replies
4.9k
views
gene symbols in Gviz
Gviz
8.9 years ago
Bogdan
▴ 670
7
votes
28
replies
6.2k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 3 months ago by
Gordon Smyth
50k • written 9.2 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
10
replies
4.2k
views
GOStat and multiple testing
GO
GOstats
GO
GOstats
updated 19.8 years ago by
A.J. Rossini
▴ 810 • written 19.8 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
9
replies
3.5k
views
rhdf5 32-bit unsigned int issue
rhdf5
bug
updated 8.9 years ago by
Bernd Fischer
▴ 550 • written 8.9 years ago by
wrob311
• 0
0
votes
10
replies
1.5k
views
Lumi warning and question
16.7 years ago
Ingrid H. G. Østensen
▴ 700
2
votes
30
replies
4.4k
views
ggbio 1.12.0 autoplot() with txdb example is broken
TranscriptDb
TranscriptDb
updated 10.1 years ago by
Tengfei Yin
▴ 490 • written 10.1 years ago by
Leonardo Collado Torres
★ 1.0k
0
votes
9
replies
2.0k
views
Pooling in microarray studies
updated 20.6 years ago by
Tan, MinHan
▴ 180 • written 20.6 years ago by
Wiesner Vos
▴ 50
1
vote
9
replies
3.8k
views
Question about ChiPseeker: plot other values in plotAvgProf2
ChiPseeker
updated 8.6 years ago by
Guangchuang Yu
★ 1.2k • written 8.6 years ago by
francesca casalino
▴ 50
0
votes
8
replies
1.6k
views
info su illumina
updated 18.3 years ago by
Lynn Amon
▴ 110 • written 18.3 years ago by
Alberto Goldoni
▴ 360
2
votes
13
replies
3.2k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
7.8 years ago • updated 7.2 years ago
s.munster
▴ 40
0
votes
32
replies
4.0k
views
How to do clustering
updated 16.9 years ago by
Seth Falcon
★ 7.4k • written 17.0 years ago by
ssls sddd
▴ 260
0
votes
10
replies
2.5k
views
Rsubread on Cygwin - error due to gcc ... -D MACOS - why?
Rsubread
updated 7.7 years ago by
Wei Shi
★ 3.6k • written 7.9 years ago by
MWSchmid
• 0
45,666 results • Page
1 of 914
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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