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180
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3 months ago • updated 10 weeks ago
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940
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written 6 months ago by
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written 2.3 years ago by
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676
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14 months ago • updated 3 months ago
Robert Castelo
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written 7.7 years ago by
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5.9k
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written 2.8 years ago by
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updated 27 days ago by
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updated 3 months ago by
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written 7.1 years ago by
myprogramming2016
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updated 10 months ago by
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written 6.8 years ago by
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updated 9 months ago by
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written 7.9 years ago by
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updated 5 months ago by
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written 3.5 years ago by
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written 6 months ago by
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written 9.0 years ago by
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Comment: Differences in differential analysis methods for RNA-Seq
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ATpoint
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4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
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Yveto
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Thank for your response. It is Illumina 450 K. I use this code
```{r }
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
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I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
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But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed):
```
limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
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HAK
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Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
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