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6
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12
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5.0k
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 21 days ago
shepherl
3.9k
2
votes
13
replies
454
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
22 days ago • updated 18 days ago
fernanda.backsouza
▴ 10
0
votes
0
replies
86
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
22 days ago
vaxahey107
• 0
15
votes
17
replies
1.2k
views
Why p value inconsistent when using different number of pathway score?
limma
23 days ago • updated 12 days ago
Chris
▴ 10
0
votes
0
replies
102
views
I am trying to detect alternative splicing.
ASpli
23 days ago
Sebashish
• 0
3
votes
2
replies
221
views
Cannabis and KEGGgraph
KEGGREST
GenomicDistributionsData
KEGGgraph
KEGG
updated 21 days ago by
Guido Hooiveld
★ 3.9k • written 23 days ago by
fernanda.backsouza
▴ 10
0
votes
3
replies
165
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 24 days ago by
James W. MacDonald
65k • written 24 days ago by
bas_work
▴ 30
2
votes
2
replies
202
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 24 days ago by
James W. MacDonald
65k • written 24 days ago by
sansan
• 0
1
vote
0
replies
316
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
24 days ago
BioinfGuru
▴ 30
4
votes
6
replies
449
views
FilterByExpr low counts with small sample size
edgeR
26 days ago • updated 21 days ago
Jonathan
▴ 10
0
votes
2
replies
142
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
24 days ago
prity6459
• 0
0
votes
3
replies
201
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 24 days ago by
Gordon Smyth
50k • written 25 days ago by
prity6459
• 0
5
votes
3
replies
287
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 3 days ago by
Gordon Smyth
50k • written 25 days ago by
Shaimaa Gamal
• 0
0
votes
4
replies
212
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
25 days ago • updated 24 days ago
sropri
• 0
0
votes
3
replies
178
views
Different number of exons in reference genome affects DEXSeq analysis
DEXSeq
updated 13 days ago by
Alejandro Reyes
★ 1.9k • written 25 days ago by
Alessia
• 0
0
votes
1
reply
162
views
Adding columns to DEXSeqResults object
DEXSeq
updated 25 days ago by
Alejandro Reyes
★ 1.9k • written 27 days ago by
Clyde
• 0
0
votes
0
replies
129
views
Warning while loading DEP package
DEP
updated 25 days ago by
shepherl
3.9k • written 25 days ago by
Namrata
• 0
0
votes
1
reply
147
views
rlog transformation
DESeq2
updated 25 days ago by
Michael Love
42k • written 25 days ago by
ishij9717
• 0
0
votes
1
reply
120
views
ONT long-read RNA sequencing - data analysis options
DESeq2
LongRead
DEXSeq
IsoformSwitchAnalyzeR
RNASeq
updated 25 days ago by
Michael Love
42k • written 25 days ago by
09191919
• 0
1
vote
2
replies
726
views
DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
26 days ago • updated 17 days ago
ussarizona
▴ 10
0
votes
1
reply
139
views
covariate with negative and positive values
DESeq2
updated 25 days ago by
Michael Love
42k • written 26 days ago by
Brynn
• 0
0
votes
1
reply
158
views
DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 25 days ago by
ATpoint
★ 4.1k • written 26 days ago by
quanah.hudson
• 0
1
vote
2
replies
228
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
25 days ago • updated 24 days ago
Le
• 0
1
vote
2
replies
169
views
Error in champ.load(): The following specified files do not exist
ChAMP
25 days ago
Sherin
• 0
0
votes
1
reply
105
views
Input Question for deseq.r
RSeqAn
updated 25 days ago by
ATpoint
★ 4.1k • written 26 days ago by
Nina
• 0
0
votes
4
replies
248
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
26 days ago • updated 23 days ago
lonn
• 0
0
votes
7
replies
338
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
26 days ago • updated 20 days ago
hortense96
• 0
0
votes
0
replies
90
views
News:
Services
flowBeads
26 days ago
creativepeptides2018
• 0
0
votes
0
replies
88
views
Enzyme Engineering
BioTIP
26 days ago
bocchemistry
• 0
0
votes
0
replies
88
views
News:
TIDES USA 2024
flowBeads
26 days ago
bocsci11
• 0
0
votes
0
replies
99
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
27 days ago • updated 26 days ago
Maliha Tabassum
• 0
0
votes
4
replies
202
views
flowStats Search Error
flowStats
updated 27 days ago by
shepherl
3.9k • written 27 days ago by
tholmes
• 0
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 26 days ago
shepherl
3.9k
0
votes
1
reply
144
views
SNP locus package for mouse?
SNPlocs
packFinder
updated 27 days ago by
James W. MacDonald
65k • written 4 weeks ago by
tian.liu0720
• 0
1
vote
2
replies
153
views
geneList error in clusterprofiler
clusterProfiler
GeneSetEnrichment
27 days ago
Ana
• 0
0
votes
5
replies
1.7k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 13 months ago by
mauricio.microbiol
• 0
0
votes
1
reply
127
views
what is the sampleFiles
chipseq
updated 27 days ago by
James W. MacDonald
65k • written 27 days ago by
zhulin
• 0
1
vote
1
reply
194
views
Differentially expressed genes in monocle pseudotime
monocle
updated 27 days ago by
Gordon Smyth
50k • written 29 days ago by
kthapa
• 0
4
votes
9
replies
464
views
Memory errors using read.bismark?
dmrseq
bsseq
4 weeks ago • updated 6 days ago
Juan Higareda
• 0
3
votes
3
replies
226
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
4 weeks ago • updated 25 days ago
jacques.imbert
• 0
0
votes
1
reply
158
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 27 days ago by
kamryncole1963
• 0 • written 4 weeks ago by
Sara
• 0
0
votes
3
replies
214
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 27 days ago by
Michael Love
42k • written 28 days ago by
andrebolerbarros
▴ 20
0
votes
0
replies
101
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
28 days ago
Virangika
• 0
0
votes
0
replies
77
views
[ChIPseeker] Unable to perform gene ontology analysis
ChIPseeker
28 days ago
Henry
▴ 10
1
vote
2
replies
250
views
How to retrieve detailed regression results from deseq2
DESeq2
4 weeks ago • updated 24 days ago
Weiqian
▴ 10
0
votes
4
replies
281
views
DEG with low counts
DESeq2
updated 24 days ago by
Michael Love
42k • written 29 days ago by
Rajat
• 0
1
vote
2
replies
618
views
GSVA error
GSVA
29 days ago • updated 28 days ago
Alex
• 0
2
votes
3
replies
334
views
ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with variable number of continuous columns
ComplexHeatmap
28 days ago • updated 27 days ago
daniel.carbajo
• 0
3
votes
3
replies
358
views
permutation test in edgeR
rna-seq
edgeR
updated 22 days ago by
Gordon Smyth
50k • written 5 weeks ago by
Netanel
• 0
1
vote
3
replies
359
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 28 days ago by
Gordon Smyth
50k • written 4 weeks ago by
Simran
• 0
192 results • Page
3 of 4
Recent ...
Replies
Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
alex.pico
▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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