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vote
5
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3.7k
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RNA-seq analysis on mouse data with human contamination in controls
rna-seq
salmon
tximport
limma
updated 8.6 years ago by
Aaron Lun
★ 29k • written 8.6 years ago by
Endre Sebestyén
▴ 70
1
vote
4
replies
5.1k
views
How to display gene symbols in UCSC Track in Gviz
gviz
ucsctrack
hgnc
updated 8.6 years ago by
James W. MacDonald
68k • written 8.7 years ago by
Greg G.
• 0
0
votes
1
reply
1.1k
views
Problem Loading affy
affy
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
carol.kiekhaefer
• 0
0
votes
2
replies
948
views
Differential expression in samples where major gene is downregulated
deseq2
updated 8.6 years ago by
Michael Love
43k • written 8.7 years ago by
dmr210
▴ 30
1
vote
7
replies
2.4k
views
DESeq2: use of unmix() function for deconvolution of whole blood
deseq2
bioconductor
rnaseq
differential gene expression
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
nsimons
• 0
0
votes
0
replies
1.1k
views
how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
8.6 years ago
sudhirjadhao2009
• 0
5
votes
4
replies
1.9k
views
interpretation of edgeR multi factor conditions in GLM
edger
multivariate
multiple factor design
glm
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
gamaliel.lysander.cabria
• 0
0
votes
9
replies
3.9k
views
clusterProfiler setup specified order
clusterProfiler
8.6 years ago
joseph
▴ 50
6
votes
4
replies
3.9k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 8.6 years ago by
alexvpickering
▴ 110 • written 8.7 years ago by
giroudpaul
▴ 40
0
votes
0
replies
1.5k
views
Job:
Postdoctoral Research position in the Genomics of Cerebral Palsy (University of Adelaide, Australia)
Cerebral Palsy
bioinformatics
data analysis
Job
8.7 years ago
gammyknee
▴ 10
0
votes
0
replies
1.5k
views
Job:
JOB: Bioinformatics positions at UMass Medical School
bioinformatician job
job
Job
8.7 years ago
alper.kucukural
▴ 10
8
votes
1
reply
3.3k
views
News:
Bioconductor 3.5 is released
bioconductor
news
release
News
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Valerie Obenchain
★ 6.8k
2
votes
0
replies
1.7k
views
Job:
PhD Position for computational scientist in Heidelberg
computational biology
job
bioinformatician job
Job
8.7 years ago
Simon Anders
★ 3.8k
1
vote
1
reply
1.3k
views
DESeq2 function in interpreting the differential expression results in terms of higher order biological processes or molecular pathways
pathway analysis
deseq2
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
tarun2
• 0
0
votes
0
replies
909
views
makeGenericArray in Genomegraph
genomegraphs
8.7 years ago
indranipoddar
• 0
0
votes
1
reply
3.2k
views
Reading sub-selected CEL files in R using ReadAffy()
Affy
affydata
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
dt
▴ 20
0
votes
0
replies
1.2k
views
DEBrowser Build errors
debrowser
8.7 years ago
alper.kucukural
▴ 10
0
votes
1
reply
990
views
Scater: mito.drop on an absolute value ?
rnaseq
scater
8.7 years ago
maria.vladoiu
• 0
0
votes
0
replies
1.8k
views
FlowViz::splom no longer works in R3.4
flowviz
r3.4
splom
8.7 years ago
hefin_8
• 0
0
votes
1
reply
1.8k
views
Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq
MAST
8.7 years ago
Andrew_McDavid
▴ 280
0
votes
0
replies
1.5k
views
How to load additional data from fcs files
fcs
concentration
experimentdata
8.7 years ago
jurg.spaak
• 0
3
votes
1
reply
1.7k
views
Filtering absent transcripts from Gene ST array
microarray
oligo
gene ST
pacalls
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
Sophie Marion de Proce
• 0
1
vote
3
replies
1.4k
views
Diffbind dba.report error
diffbind
8.7 years ago
j.bergenstrahle
▴ 90
0
votes
6
replies
1.8k
views
min enrichment in peak calling with diffHiC?
diffhic
peak
updated 8.7 years ago by
Aaron Lun
★ 29k • written 8.7 years ago by
hwick1
▴ 20
1
vote
7
replies
4.6k
views
DiffBind R package issue
diffbind
atac-seq
updated 8.7 years ago by
Rory Stark
★ 5.2k • written 8.7 years ago by
niu.shengyong
▴ 10
1
vote
0
replies
1.7k
views
Job:
Expanding the impact of genomic data on drug development (Immuneering Corporation, Cambridge MA and New York NY)
computational biology
drug development
genomics
Job
8.7 years ago
mmartin
▴ 20
0
votes
1
reply
1.5k
views
How does the function MEDIPS.CpGenrich work?
medips
updated 8.7 years ago by
Lukas Chavez
▴ 570 • written 8.7 years ago by
stb
• 0
1
vote
15
replies
4.6k
views
DEXSeq: Error in FUN(X[[i]], ...) : subscript out of bounds
dexseq
updated 3.0 years ago by
Zhuqiang
• 0 • written 8.7 years ago by
cpsosa0006
• 0
2
votes
2
replies
2.8k
views
get pixel coordinates interactively with EBimage
EBImage
EBImage
updated 8.7 years ago by
Andrzej Oleś
▴ 750 • written 12.9 years ago by
Arnaud Duranel
▴ 60
2
votes
2
replies
1.6k
views
Deals with image value superior to 0,1 range
value
ebimage
writeImage
error
8.7 years ago
valerian.meline
• 0
1
vote
3
replies
1.6k
views
GenomicFeatures should support old 'Db type' value
genomicfeatures
8.7 years ago
matt.chambers42
▴ 10
0
votes
1
reply
2.9k
views
Subsetting/subsequencing AAStringSet containing sequences of unequal length
biostrings
aastringset
subsetting
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
bri.isabella
• 0
0
votes
5
replies
3.0k
views
Problem trying to decorate a heatmap inside a function
complexheatmap
8.7 years ago
AR3513
• 0
1
vote
3
replies
1.8k
views
Bioconductor Software download
biocinstaller
bioconductor
download
8.7 years ago
s.munster
▴ 40
0
votes
1
reply
1.3k
views
objNameToList() on some particular list of objects in parent frame
tkWidgets
xml
kegggraph
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
urwaCFC
• 0
8
votes
4
replies
2.7k
views
DESeq2: interaction term as in limma
deseq2
deseq
limma
interaction term
updated 8.7 years ago by
Simon Anders
★ 3.8k • written 8.7 years ago by
sbcn
▴ 80
2
votes
3
replies
4.3k
views
How to convert graphNEL object into Adjacency Matrix?
graph
kegggraph
xml
updated 8.7 years ago by
Robert Castelo
★ 3.4k • written 8.7 years ago by
urwaCFC
• 0
0
votes
0
replies
872
views
BioSeqClass function predictPFAM problem
predictPFAM
XStringSet
8.7 years ago
Max
• 0
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Support Specialist @ University at Albany, Albany, NY
bioinformatician job
bioinformatics
job
Job
8.7 years ago
ualbanybioinfo
• 0
1
vote
8
replies
3.1k
views
BiomaRt package not working
biomart
getbm
8.7 years ago
Didi
▴ 10
0
votes
1
reply
2.0k
views
Gviz transcriptAnnotation with gff
gviz
gff
updated 8.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.7 years ago by
kbrevik
• 0
6
votes
4
replies
3.9k
views
Can edgeR TMM normalization be used for other count data?
edgeR
tmm
normalization
counts
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
jol.espinoz
▴ 40
2
votes
2
replies
1.4k
views
Diffbind data extraction after DE analysis
diffbind
updated 8.7 years ago by
Gord Brown
▴ 670 • written 8.7 years ago by
j.bergenstrahle
▴ 90
0
votes
1
reply
1.1k
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
8.7 years ago
rachelrodgers12
• 0
3
votes
1
reply
1.9k
views
biomaRt error in useMart
biomart
updated 8.7 years ago by
Mike Smith
★ 6.6k • written 8.7 years ago by
vedran.franke
• 0
1
vote
1
reply
7.8k
views
How to get the all CpG sites genome postion for hg19
CpG
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
ericotorrieri
• 0
0
votes
2
replies
862
views
Across disease log2FC shrinkage with DESeq2
deseq2
8.7 years ago
m.f.g
• 0
1
vote
3
replies
1.7k
views
DESeq2 minimum p value
deseq2
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
rw6
• 0
1
vote
2
replies
1.8k
views
Low FDR for significant peaks in DiffBind output
diffbind
8.7 years ago
Silvia
• 0
0
votes
0
replies
895
views
miRNApath : Error while calling run enrichment function
mirnapath
8.7 years ago
megha.lal
• 0
46,699 results • Page
335 of 934
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Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
by
TikTsokaasocissalpc
• 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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