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2
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Error in GRanges strand input
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updated 8.6 years ago by 25k • written 8.7 years ago by • 0
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Operation on GRanges Object
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updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 110
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Analysis small RNA data with DESeq2
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updated 8.6 years ago by 43k • written 8.6 years ago by • 0
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updated 8.6 years ago by 16k • written 8.6 years ago by • 0
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Problem with link generated with R using the string_db$get_link
stringdb
8.6 years ago Ilario De Toma ▴ 10
0
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1
reply
1.2k
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Need Help Using DirichletMultinomial Package
dirichletmultinomial dmm
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
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RStudio quits unexpectedly while running DiffBind on R 3.4.0
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updated 8.6 years ago by ▴ 670 • written 8.6 years ago by • 0
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unable to connect to 'string.uzh.ch' on port 80
STRINGdb vignette
updated 8.6 years ago by ▴ 10 • written 8.6 years ago by • 0
0
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1
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can I extract data for subset of cancer types from GSE62944
limma rna-seq
updated 8.6 years ago by ▴ 130 • written 8.6 years ago by • 0
0
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1
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1.0k
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Rsamtools: is there a way to invoke samtools reheader?
Rsamtools samtools reheader
updated 8.6 years ago by 25k • written 8.6 years ago by • 0
0
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'memory not mapped' error when running monocole
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8.6 years ago Assa Yeroslaviz ★ 1.5k
0
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Error while smoothing BS-seq data with bsseq
bsseq
updated 8.6 years ago by • 0 • written 10.2 years ago by • 0
0
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0
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1.5k
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Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
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8.6 years ago svlachavas ▴ 840
0
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1
reply
2.8k
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error when rendering pathway with pathview package
pathview
updated 8.6 years ago by ★ 1.6k • written 8.7 years ago by ▴ 10
2
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0
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1.3k
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News: Bioconductor Dockers Updated
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8.6 years ago shepherl 4.2k
1
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4
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2.8k
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cannot allocate memory?
readVcf
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 110
1
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2
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1.2k
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Exclude Mutations from Mutation List
variantannotation
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 110
0
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Data structure for my dataset
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updated 8.6 years ago by ★ 11k • written 8.6 years ago by • 0
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1
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Regarding ChIPpeakAnno installation error
chippeakanno
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
1
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7
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3.3k
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Mapping Probes to a Genome
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updated 8.6 years ago by ▴ 10 • written 9.3 years ago by ★ 1.6k
0
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1.3k
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RNA seq data
limma
updated 8.6 years ago by ▴ 840 • written 8.6 years ago by • 0
2
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2
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1.8k
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fdr score for degs
fdr deg
updated 8.6 years ago by ▴ 840 • written 8.6 years ago by ▴ 30
0
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0
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966
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help with mirIntegrator output table fields explanation
mirintegrator totalAcc totalPert
8.6 years ago sarai.var.fer • 0
2
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1
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4.0k
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How to load WGCNA TOM file?
wgcna connectivity
8.6 years ago syrttgump ▴ 20
0
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1
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2.5k
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GAGE or GSEABase using expression data and pathway.gmt file for mouse
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updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by • 0
2
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6
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R getting "stuck" with RoadMap resource retrieval through AnnotationHub
roadmap project annotationhub
8.6 years ago vanesa_1230 • 0
0
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14
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3.3k
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Path to file in windows
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updated 8.6 years ago by ▴ 670 • written 8.7 years ago by • 0
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Tutorial: Epigenomics RoadMap Project files now accessible via AnnotationHub
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updated 8.6 years ago by • 0 • written 10.6 years ago by ▴ 390
0
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0
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903
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DMRforPairs statistical testing framework is invalid for >2 samples?
DMRforPairs
8.6 years ago gabriel.rosser ▴ 20
7
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17
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6.8k
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DESeqDataSetFromTximport: Error in checkSlotAssignment
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8.6 years ago JWCarlson ▴ 80
2
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4
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2.1k
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Search for Drugs related to results of differential expression analysis using RNA-seq
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updated 8.6 years ago by • 0 • written 8.6 years ago by ▴ 30
1
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0
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Annotation using IlluminaHumanv3.db
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8.6 years ago christina.fjeldbo ▴ 10
0
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1
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1.8k
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simple affy: covdesc file in directory, but cant get raw.data <- read.affy () command to work
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updated 8.6 years ago by ★ 4.1k • written 8.6 years ago by • 0
0
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3
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Regarding Gviz package
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updated 8.6 years ago by 68k • written 8.6 years ago by • 0
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Putative batch effect assessment and correction for downstream DE analysis with microarray dataset
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8.6 years ago svlachavas ▴ 840
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Crash GSVA 1.24.0 with bootstrapping
GSVA bug
updated 8.6 years ago by ★ 3.4k • written 8.6 years ago by ▴ 20
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DESeq extract result of lrt for a subset of the samples
deseq2 rnaseq lrt
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
0
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0
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Rstudio crashes when running monocole
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8.6 years ago Assa Yeroslaviz ★ 1.5k
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860
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News: Single Package Builder Upgrade
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8.6 years ago shepherl 4.2k
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7
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Inconsistencies in biomart results
biomart
updated 8.6 years ago by ★ 6.6k • written 9.3 years ago by 1.6k
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4
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DESeq2: How do I compare certain samples that are in two groups and two treatments
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8.7 years ago • updated 8.6 years ago zeynep.nenseth • 0
1
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3
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microarray analysis code
microarray
8.7 years ago • updated 8.6 years ago nia ▴ 30
0
votes
2
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annotation in microarray analysis
microarray
8.7 years ago • updated 8.6 years ago farahqureshi5 • 0
2
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4
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rtracklayer::import.bed does not close connections.
rtracklayer
updated 8.6 years ago by ★ 11k • written 8.6 years ago by ▴ 180
3
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2
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3.1k
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Reads mistakenly being assigned to Unassigned_NoFeatures category when using featureCounts
subread featurecounts
updated 8.6 years ago by ★ 3.6k • written 8.7 years ago by ▴ 70
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5
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DESeq2 3 factor analysis
deseq2
updated 8.6 years ago by • 0 • written 9.1 years ago by • 0
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4
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local versus parametric fitType in DESeq2
deseq2
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 10
0
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0
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Definition of some of the columns in PSCBS segmentation file
aroma.light affiymetrix SNP6 PSCBS parent specific copy number
8.6 years ago vakul.mohanty ▴ 20
0
votes
7
replies
3.2k
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DESeq2: how to identify confounding variable in the design matrix
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8.7 years ago • updated 8.6 years ago lina.faller ▴ 10
0
votes
1
reply
1.3k
views
DESeq2 "unmix" function
deseq2 rnaseq
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
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