0
votes
9
replies
2.3k
views
It's possible to use clusterProfiler without an annotationDBI package
clusterProfiler
2.1 years ago nromerov • 0
0
votes
3
replies
1.2k
views
Deseq2 - Pairwise results from 6 conditions - error non-conformable arguments
DESeq2
2.1 years ago claire • 0
0
votes
2
replies
859
views
WGCNA less samples
RNA-Seq WGCNA Worms
2.1 years ago davca • 0
0
votes
0
replies
737
views
Cannot read biom file in R
RESOLVE
updated 2.1 years ago by 4.2k • written 2.1 years ago by • 0
1
vote
1
reply
645
views
Minimum datasets needed for meta analysis
RnaSeqSampleSize
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by ▴ 10
2
votes
3
replies
1.6k
views
DESeq2 estimateSizeFactors iterate takes too long
RNASeq DESeq2
2.1 years ago Karthik • 0
2
votes
1
reply
758
views
DataFrame Printing User Control
S4Vectors
updated 2.1 years ago by 16k • written 2.1 years ago by ★ 1.6k
3
votes
2
replies
1.2k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
2.1 years ago henrydionne ▴ 10
3
votes
4
replies
1.5k
views
Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
2.1 years ago pl23 • 0
0
votes
0
replies
649
views
Normalising processed Proteomics data in R
Bioconductor Proteomics
2.1 years ago Joshua • 0
0
votes
1
reply
934
views
Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
2
votes
5
replies
4.6k
views
STRINGdb R package reference class instantiation with v12.0
STRINGdb
updated 21 months ago by ▴ 110 • written 2.1 years ago by • 0
0
votes
2
replies
990
views
FlowSOM error system.file()
FlowSOM
updated 2.1 years ago by ▴ 360 • written 2.1 years ago by • 0
1
vote
2
replies
2.6k
views
How to find stop codons for a list of genes
stopcodon biomaRt
2.1 years ago Marek Gierlinski ▴ 30
2
votes
28
replies
7.3k
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub AnnotationForge Pseudomonas_aeruginosa
updated 2.1 years ago by 68k • written 3.1 years ago by ▴ 10
0
votes
1
reply
811
views
DESeq2 and determining effects of treatment on a priori/candidate genes from a bulk-RNAseq experiment
RNASeqData DifferentialExpression DESeq2
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 10
2
votes
2
replies
1.1k
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
2.1 years ago Manthos • 0
1
vote
4
replies
1.5k
views
Can DESeq2 be used to compare groups of genes?
DESeq2
2.1 years ago pl23 • 0
0
votes
4
replies
1.0k
views
ATACseqTFEA - preparebindingSites() for whole genome?
ATACseqTFEA
updated 23 months ago by ★ 1.3k • written 2.1 years ago by • 0
0
votes
1
reply
764
views
plotAvgProf - How to change labels in the facet option
ChIPseeker
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
votes
2
replies
1.0k
views
Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by • 0
0
votes
4
replies
1.6k
views
rhdf5: error trying to access files from S3 Cloud from NASA earthaccess
rhdf5
2.1 years ago Caio • 0
1
vote
7
replies
10k
views
scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by package 'Matrix'"
runUMAP scater Matrix
updated 22 months ago by 16k • written 2.2 years ago by ▴ 10
2
votes
1
reply
1.4k
views
ChAMP can't be found in Bioc3.18?
ChAMP
2.1 years ago ramonfallon ▴ 20
0
votes
6
replies
3.7k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 2.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
0
votes
0
replies
850
views
SomaticSignatures normalization for trinucleotide motifs in reference genome
Normalization SomaticSignatures
2.1 years ago vasily.dobrovolsky • 0
0
votes
1
reply
801
views
Strange behaviour in Rsubread when trimming sequences leading to a change inthe order of the reads
Rsubread
updated 2.1 years ago by 53k • written 2.1 years ago by • 0
2
votes
2
replies
1.2k
views
Predicting missing values splines DESeq2
deseq DESeq2
2.1 years ago georgii.vdovin • 0
0
votes
0
replies
627
views
GaussNorm fails to recognize flowFrames in flowSet as individual elements
flowStats
2.1 years ago mikkel.byrdal • 0
1
vote
3
replies
2.7k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 2.1 years ago by ▴ 750 • written 4.7 years ago by • 0
2
votes
0
replies
761
views
News: Bioconductor's Transition Away from Twitter/X
Bioconductor
2.1 years ago Maria Doyle ▴ 110
0
votes
1
reply
1.8k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 2.1 years ago by • 0 • written 5.0 years ago by ▴ 20
0
votes
10
replies
2.0k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
2.1 years ago • updated 22 months ago ScafioRuo • 0
0
votes
0
replies
1.0k
views
Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
csaw ChIPseq DiffBind
2.1 years ago jared.andrews07 ▴ 30
0
votes
1
reply
673
views
gene aligning reference
geneRecommender gene
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
votes
0
replies
635
views
accesing gene name RNAseq
genetics GeneticsPed Genetics
2.1 years ago Gülsüm • 0
3
votes
5
replies
2.4k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2
updated 21 months ago by • 0 • written 2.2 years ago by ▴ 10
2
votes
4
replies
1.5k
views
limma + voom combine voomWithQualityWeights and duplicateCorrelation
voom RNASeq limma
2.1 years ago Tyler Sagendorf ▴ 10
0
votes
1
reply
602
views
DESeq2 design with unbalance data and a multifactor design
DESeq2
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by • 0
0
votes
0
replies
738
views
Identifying populations within a FlowSOM tree
FlowSOM
2.1 years ago agus_rizzo • 0
1
vote
2
replies
3.3k
views
trying to add SingleR label to Seurat Object fails
SingleR Seurat
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by ★ 1.5k
0
votes
4
replies
948
views
Sign Output Values PADOG
PADOG
written 2.1 years ago by • 0
0
votes
1
reply
702
views
EGSEA with Affymetrix data
EGSEA
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
3
votes
6
replies
1.7k
views
Methylation data analysis
MethylationArrayData methylationArrayAnalysis
2.1 years ago aldea85 • 0
0
votes
2
replies
1.6k
views
annotatePeak error for some problem
ChIPseeker
written 2.1 years ago by • 0
0
votes
1
reply
697
views
COTAN mantainance
BuildReport
updated 2.1 years ago by 4.2k • written 2.1 years ago by • 0
0
votes
0
replies
1.6k
views
Version map cannot be validated - not mapping to new bioconductor website
Install
2.1 years ago Alexander • 0
0
votes
0
replies
732
views
News: CRAN downtime
BiocManager Bioconductor
2.2 years ago shepherl 4.2k
0
votes
0
replies
504
views
R/sql code to find the haplotype data from patient's rsIDs
starallele phenoTest
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
votes
2
replies
1.4k
views
DESeq2 for microbiome data: raw counts or percentages?
microbiome DESeq2
2.2 years ago • updated 2.1 years ago anton.kratz ▴ 60
46,709 results • Page 38 of 935
Recent ...
Replies
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Votes
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Popular Question to Hervé Pagès 16k
Teacher to Michael Love 43k
Popular Question to lianov • 0
Locations • All
United States, 15 minutes ago
United States, 1 hour ago
United States, 2 hours ago
Canada, 2 hours ago
Belgium, 3 hours ago
Traffic: 1445 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6