0
votes
3
replies
2.1k
views
lumi package impossible to install - xtable library
lumi xtable
9.7 years ago fournier.berlin • 0
1
vote
1
reply
1.7k
views
minfi starting from beta values
minfi
9.7 years ago Asma rabe ▴ 290
0
votes
0
replies
1.1k
views
Error in TSCAN
TSCAN
9.7 years ago xuyang_dami • 0
2
votes
6
replies
2.8k
views
Using TCGAbiolinks for exon and oligonucleotide level microarray
tcga tcgabiolinks microarray exons oligonucleotide
updated 9.7 years ago by ▴ 270 • written 9.7 years ago by • 0
0
votes
2
replies
4.2k
views
Get the reactions for a organism using KEGGREST
keggrest
9.7 years ago kjboteroo • 0
0
votes
2
replies
1.6k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite biocupgrade
updated 9.7 years ago by 25k • written 9.7 years ago by • 0
1
vote
4
replies
1.9k
views
Issues installing GenomicAlignments
genomicalignments
9.7 years ago Radhouane Aniba ▴ 240
0
votes
1
reply
1.0k
views
tRanslatome package plots
tRanslatome
updated 9.7 years ago by • 0 • written 9.7 years ago by • 0
0
votes
1
reply
1.5k
views
Pull request for customProDB package
customProDB featurerequest
updated 9.7 years ago by ★ 8.2k • written 9.7 years ago by ▴ 10
1
vote
4
replies
2.0k
views
DESeq2 , model matrix with 4 factors, error: inv(): matrix appears to be singular
deseq2 multiple factor design model.matrix
updated 9.7 years ago by 43k • written 9.7 years ago by • 0
0
votes
1
reply
2.4k
views
Error in ChIPQC: "Error in if (res >= minval) { : missing value where TRUE/FALSE needed"
chipqc
updated 9.7 years ago by ★ 5.2k • written 9.9 years ago by ▴ 140
0
votes
1
reply
1.4k
views
Error in makeOrganismDbFromBiomart call for Heliconius melpomene (Ensembl Metazoa)
OrganismDbi
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ▴ 90
0
votes
2
replies
1.2k
views
plotZScores error in FourCSeq
fourCseq
9.8 years ago • updated 9.7 years ago snowhune • 0
5
votes
10
replies
5.7k
views
Interpretation of results for treat & topTreat functions from limma regarding microarray abalysis
limma treat topTreat microarray
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 840
0
votes
0
replies
2.1k
views
News: Workshop: Clinical Bioinformatics as a Service, at ECCB 2016 - register till 29 May
workshop News
9.8 years ago • updated 9.7 years ago Wolfgang Huber ★ 13k
2
votes
2
replies
3.8k
views
How is the mean-variance plot calculated?
edaseq
updated 9.7 years ago by ★ 13k • written 9.7 years ago by • 0
1
vote
3
replies
1.9k
views
How to resolve length bias and get GO/KEGG pathway for "non-standard" species in limma or goseq ?
rna-seq limma goseq
updated 9.7 years ago by ▴ 320 • written 9.7 years ago by ▴ 40
0
votes
1
reply
1.1k
views
[bug] build problem: compiler is
DESeq2
updated 9.7 years ago by ★ 8.2k • written 9.7 years ago by • 0
0
votes
3
replies
1.5k
views
UcscTrack scan() error
Gviz
updated 9.7 years ago by ★ 1.6k • written 9.8 years ago by ▴ 10
3
votes
3
replies
1.6k
views
Gviz: Should the add53 parameter react to reverseStrand = TRUE ?
gviz
updated 9.7 years ago by ★ 1.6k • written 9.9 years ago by ▴ 90
3
votes
10
replies
3.0k
views
Shifted dashed frame in Gviz boxplot
gviz boxplot
updated 9.7 years ago by ★ 1.6k • written 9.8 years ago by ▴ 680
2
votes
1
reply
1.4k
views
Obsolete use of AC_INIT macro
rtracklayer
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 180
3
votes
0
replies
2.0k
views
Job: PhD Positions in Computational Cancer Research
jobs bioinformatics biostatistics cancer next-generation sequencing Job
9.7 years ago Bernd Fischer ▴ 550
2
votes
1
reply
1.3k
views
Epivisr namespace error
epivizr
updated 9.7 years ago by ▴ 60 • written 9.7 years ago by ▴ 20
3
votes
1
reply
1.4k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 9.7 years ago by ▴ 420 • written 9.9 years ago by ▴ 140
0
votes
1
reply
1.2k
views
ChipQC report tables
ChIPQ
updated 9.7 years ago by ▴ 420 • written 9.8 years ago by ▴ 20
0
votes
1
reply
1.2k
views
biomaRt changed host issues
biomart
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
0
votes
0
replies
2.1k
views
GOseq tutorial for not supported organisms: am I doing it correctly?
deseq2 goseq biomart r rnaseq
9.7 years ago CandiceChuDVM ▴ 40
4
votes
3
replies
2.4k
views
Error installing AnnotationHub on Fedora
Annotationhub curl httr fedora
updated 9.7 years ago by ▴ 30 • written 10.4 years ago by ▴ 10
1
vote
3
replies
1.4k
views
nice 3D displays for PCA analysis
PCA
updated 5 weeks ago by • 0 • written 9.7 years ago by ▴ 670
0
votes
5
replies
2.5k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq anova metagenomics
9.7 years ago David ▴ 860
2
votes
5
replies
11k
views
Difference in Wald and LRT test for two condition RNAseq data.
deseq2
updated 9.7 years ago by 43k • written 9.7 years ago by • 0
2
votes
1
reply
3.1k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray limma multiple treatments lfc
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
2
votes
4
replies
1.2k
views
How to calculate design matrix and conduct moderate t test to find DEGs
limma
updated 9.7 years ago by ▴ 420 • written 9.7 years ago by • 0
0
votes
1
reply
1.2k
views
error in noGGi
software error seqnames characters r chipseq
9.7 years ago awakumaya • 0
0
votes
2
replies
1.2k
views
Bioconductor HTML docs seem to be broken
bioconductor
9.7 years ago igor ▴ 50
0
votes
1
reply
1.6k
views
help installing bioconductor workflows
workflows biocinstaller error
9.7 years ago rocknrollscience • 0
2
votes
1
reply
1.8k
views
RIPSeeker error Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) : subscript contains NAs or out-of-bounds indices
ripseeker
10.0 years ago • updated 9.7 years ago xfwang ▴ 20
1
vote
5
replies
3.9k
views
Ensembl bacteria not accessible from biomaRt
biomart ensembl
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 20
2
votes
2
replies
4.2k
views
DESeq2 transformation to use for PCA plot
deseq2 pca rlog transformation variancestabilizingtransformation
9.7 years ago Shobana Sekar ▴ 20
0
votes
1
reply
1.3k
views
Ensembl version from non-vertebrate biomaRt
biomart ensembl
updated 9.7 years ago by ▴ 70 • written 9.7 years ago by ▴ 20
1
vote
4
replies
1.8k
views
How to change the font size of Y axis title of datatrack
GVIZ
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
0
votes
0
replies
2.9k
views
Trouble with GO.db - installation of package GO.db had non-zero exit status
software error GO.db
9.7 years ago christin.berlin • 0
2
votes
11
replies
3.0k
views
RBGL installation error
rbgl
9.7 years ago Julian Gehring ★ 1.3k
0
votes
0
replies
1.1k
views
Error in TopologyGSA
topologyGSA dataframe
9.7 years ago saamar.rajput • 0
2
votes
4
replies
1.9k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 350
2
votes
10
replies
2.6k
views
Reorder exons on negative strand in GRanges list
genomicranges
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 90
0
votes
0
replies
1.7k
views
ChAMP ComBat step error: Error in if (min(beta.c) == 0) { : missing value where TRUE/FALSE needed
ChAMP methylation illumina450k
9.7 years ago Daniel E. Weeks ▴ 30
0
votes
0
replies
1.2k
views
cell analysis- significance output perturbed in shiny environment
cellcode significance
9.7 years ago christopher.clarskon15 ▴ 20
0
votes
0
replies
1.4k
views
Lumi Control Data
lumi illumina microarray
9.7 years ago m.a.bentley • 0
46,738 results • Page 396 of 935
Recent ...
Replies
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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