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2
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1.4k
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3.3 years ago rwan.work • 0
3
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4
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difference between txi$counts and txi$abundance when countsFromAbundance is true
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updated 3.3 years ago by ★ 5.0k • written 3.3 years ago by • 0
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3.3 years ago annamariabugaj ▴ 10
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3.3 years ago Seongwoo Han ▴ 10
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updated 3.3 years ago by ★ 5.0k • written 3.3 years ago by ▴ 30
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updated 3.3 years ago by ▴ 10 • written 3.3 years ago by • 0
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3.3 years ago osieman52 • 0
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3.3 years ago merv ▴ 150
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3.3 years ago Guandong Shang ▴ 40
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3.3 years ago Romina • 0
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updated 3.3 years ago by 43k • written 3.3 years ago by • 0
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DESEQ2 Normalisation Factor
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3.3 years ago MAHESH • 0
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1
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863
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DESeq2 : LRT with factorial and continuous data
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updated 3.3 years ago by 43k • written 3.3 years ago by • 0
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updated 3.3 years ago by 43k • written 3.3 years ago by • 0
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updated 3.3 years ago by 43k • written 3.4 years ago by • 0
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3.3 years ago marymshahi2021 • 0
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Error when using tallyVariants with parallel jobs not returning results
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updated 3.3 years ago by 6.7k • written 3.3 years ago by • 0
0
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DESeq2 with incorrect adjusted Pvalues
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updated 3.3 years ago by 43k • written 3.3 years ago by • 0
2
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DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 3.3 years ago by ★ 5.2k • written 3.4 years ago by • 0
1
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0
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903
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Data format format for summarising each NGS read without collapsing into a count
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3.3 years ago Rick ▴ 10
0
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1
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[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 3.3 years ago by 4.3k • written 3.3 years ago by • 0
2
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3
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limma::goana - "Invalid value for odds"
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updated 3.3 years ago by 53k • written 3.3 years ago by ▴ 30
0
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2
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3.3 years ago lgspeight • 0
1
vote
1
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1.7k
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issue with biomaRt ENSEMBL_MART_SNP
biomaRt
updated 3.3 years ago by ★ 6.6k • written 3.3 years ago by ▴ 10
0
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0
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751
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DEXSeq: mcols(dxd)$fullBetaConv either contains TRUE or NA
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3.4 years ago Matthias Munz ▴ 20
1
vote
3
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1.7k
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different stat and p values when filtering or not by lfc in DESeq2
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updated 3.3 years ago by ▴ 760 • written 3.4 years ago by • 0
0
votes
0
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787
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GO-terms Semantic Similarity Measures: How to decide which method(s) to use?
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3.4 years ago Andrew • 0
3
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6
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3.4 years ago Xinwei • 0
0
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3
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1.1k
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code syntax for DESeq2 to derive DEGs from a complicated contrast or interaction contrast?
DESeq2 Complicated.contrast DEGs
updated 3.3 years ago by 43k • written 3.4 years ago by • -60
1
vote
1
reply
1.2k
views
What is the effect of passage number in the differential gene expression when performing RNA sequencing analysis?
DESeq2 passagenumber
updated 3.4 years ago by ★ 5.0k • written 3.4 years ago by • 0
1
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1
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923
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updated 3.1 years ago by • 0 • written 3.4 years ago by • 0
0
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3.4 years ago mfaleevs • 0
-6
votes
4
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1.3k
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is it possible and reasonable for edgeR to derive DEGs from a complicated contrast or contrast of contrast?
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3.4 years ago Mike • -60
13
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3
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3.2k
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News: Bioconductor teaching week
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written 3.4 years ago by 1.6k
0
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2
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ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file.
FeatureCounts
3.4 years ago • updated 3.3 years ago KMS ▴ 20
0
votes
2
replies
2.3k
views
clarification of the way of converting standard error to confidence interval for logFC in DESeq2 result table
DESeq2 Confidence.Interval
3.4 years ago Mike • -60
0
votes
1
reply
1.1k
views
REFSEQ identifiers XP_047XXXXXX do not have ENTREZID within org.Hs.eg.db
org.Hs.eg.db
updated 3.4 years ago by 53k • written 3.4 years ago by • 0
0
votes
5
replies
3.2k
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How to add a BioConductor package to a Docker image based on rocker/shiny
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3.4 years ago • updated 3.3 years ago Sam ▴ 10
1
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1
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2.5k
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Extract only dataframes from AnnData objects
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updated 3.4 years ago by ▴ 760 • written 3.4 years ago by ▴ 150
3
votes
10
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4.3k
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error in package GenVisR while installing
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updated 2.2 years ago by ▴ 30 • written 3.5 years ago by • 0
0
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1
reply
709
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ref treatment
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updated 3.4 years ago by ★ 1.4k • written 3.4 years ago by • 0
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3
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read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- TRUE : wrong args for environment subassignment
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updated 3.4 years ago by ▴ 760 • written 3.4 years ago by • 0
0
votes
0
replies
1.2k
views
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3.4 years ago hemangininaik09 • 0
5
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1
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4.1k
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How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
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3.4 years ago merv ▴ 150
0
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0
replies
1.9k
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Combining multiple MTX (matrix market) files to HDF5 Array format
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3.4 years ago merv ▴ 150
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