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7.2 years ago Julie Zhu ★ 4.3k
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6.9 years ago • updated 6.8 years ago Laurent Gatto 1.6k
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5.5 years ago gagneur ▴ 10
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5.0 years ago Daniel Brewer ▴ 100
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7.9 years ago Shamith.Samarajiwa ▴ 180
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9.1 years ago e.schmidt ▴ 10
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9.6 years ago Wolfgang Huber ★ 13k
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3.7 years ago bauer ▴ 10
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4.6 years ago dezer ▴ 10
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7.7 years ago Daniel Stekhoven ▴ 10
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7.5 years ago Gordon Smyth 50k
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5.3 years ago • updated 4.2 years ago Michael Love 41k
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9.0 years ago Federico Marini ▴ 150
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3.9 years ago Fred Hutch (Recruiting) ▴ 40
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6.9 years ago Frank Kramer ▴ 60
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7.5 years ago kaufmanm ▴ 10
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7.8 years ago Robert Ivanek ▴ 730
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2.3 years ago Thomas ▴ 10
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9.4 years ago Levi Waldron ★ 1.1k
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5.3 years ago Wolfgang Huber ★ 13k
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8.8 years ago • updated 8.7 years ago heinrich.kovar ▴ 10
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8.1 years ago Wolfgang Huber ★ 13k
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6.5 years ago Aaron Lun ★ 28k
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6.5 years ago bulfin.triona ▴ 10
1
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5.3 years ago paul ▴ 10
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8.9 years ago Andy Lynch ▴ 120
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9.6 years ago Rory Stark ▴ 10
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6.4 years ago • updated 6.1 years ago Daniel Brewer ▴ 100
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Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
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7.9 years ago altuna akalin ▴ 20
519 results • Page 2 of 11
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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