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Job: Bioinformatics Analyst II, Genomics Shared Resource - Fred Hutchinson Cancer Research Center, Seattle, WA
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4.5 years ago Fred Hutch (Recruiting) ▴ 40
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5.9 years ago michela.locci • 0
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7.2 years ago kraiczy ▴ 10
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Job: Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
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2.4 years ago hbolouri • 0
519 results • Page 1 of 11
Recent ...
Replies
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Votes
A: Print Differentially Expressed Exons From Dexseq Results
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Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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