0
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0
replies
117
views
I am trying to detect alternative splicing.
ASpli
5 weeks ago Sebashish • 0
0
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4
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285
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Differential peaks that were not identified in diffbind were identified in diseq2
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6 weeks ago • updated 5 weeks ago lonn • 0
0
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2
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292
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Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
8 weeks ago • updated 5 weeks ago isaac.vock • 0
1
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2
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257
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significant difference of p-values with dream() after updating VariancePartition
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5 weeks ago Le • 0
0
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3
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299
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A ComBat-seq issue: the covariates are confounded
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updated 5 weeks ago by ▴ 850 • written 6 weeks ago by • 0
0
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0
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141
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Warning while loading DEP package
DEP
updated 5 weeks ago by 3.9k • written 5 weeks ago by • 0
1
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2
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194
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Error in champ.load(): The following specified files do not exist
ChAMP
6 weeks ago • updated 5 weeks ago Sherin • 0
0
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1
reply
118
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Input Question for deseq.r
RSeqAn
updated 5 weeks ago by ★ 4.2k • written 6 weeks ago by • 0
1
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7
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1.9k
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Error using champ.import
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updated 6 weeks ago by • 0 • written 11 months ago by • 0
0
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0
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100
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Enzyme Engineering
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6 weeks ago bocchemistry • 0
0
votes
0
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114
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Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror IsoCorrectoR
6 weeks ago Maliha Tabassum • 0
0
votes
1
reply
145
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what is the sampleFiles
chipseq
updated 6 weeks ago by 66k • written 6 weeks ago by • 0
2
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2
replies
205
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[DiffBind] Obtaining normalization factors
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6 weeks ago Henry ▴ 10
0
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0
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114
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Diffbind Error in socketConnection
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6 weeks ago Virangika • 0
0
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0
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[ChIPseeker] Unable to perform gene ontology analysis
ChIPseeker
6 weeks ago Henry ▴ 10
0
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1
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160
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Deseq2 Rlog transformation
DESeq2
updated 6 weeks ago by ★ 4.2k • written 6 weeks ago by • 0
0
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1
reply
228
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compareCluster dotplot: how to modify the genesets order
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updated 6 weeks ago by ★ 4.0k • written 7 weeks ago by • 0
0
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109
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Cannot use `readVcf()` on a file created with `writeVcf()`
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6 weeks ago Stevie Pederson • 0
0
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1
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208
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DESeq2 gives an error and R crashes
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7 weeks ago • updated 6 weeks ago Shefali • 0
3
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6
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326
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Surrogate variable analysis for paired RNA seq experiment
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6 weeks ago nhaus ▴ 40
0
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0
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165
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LearnTaxa with custom Silva
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7 weeks ago Eryn • 0
0
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0
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102
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queryDGIdb lexical error for some genes
lexicalerror rDGIdb DGIdb json
7 weeks ago Dennis • 0
0
votes
1
reply
380
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Gene names from Matrix
BioCor StarBioTrek MatrixGenerics
updated 7 weeks ago by ▴ 730 • written 7 months ago by • 0
0
votes
0
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139
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ggtree tip label position (depth)
ggtree
7 weeks ago Roope • 0
0
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1
reply
533
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Cibersort phenotype file
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updated 7 weeks ago by • 0 • written 16 months ago by • 0
2
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6
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517
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How to make boxplot with pairwise and overall p value from Limma
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7 weeks ago Chris ▴ 10
0
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1
reply
149
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Granges regionCounts not returning the expected number of entries
methylKit
7 weeks ago Modoc Kesner ▴ 10
0
votes
1
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569
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CopywriteR output
CopywriteR
updated 7 weeks ago by • 0 • written 2.6 years ago by • 0
0
votes
2
replies
323
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Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
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8 weeks ago • updated 7 weeks ago fer_talavera • 0
0
votes
0
replies
169
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Why output of GSEA is not the same but inversed, when you have the same but inversed input data?
clusterProfiler gseKEGG
7 weeks ago andromeda • 0
0
votes
0
replies
122
views
flowDensity on a flowset
flowDensity
7 weeks ago fredrikwallberg • 0
0
votes
0
replies
110
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DMRcate error need at least two non-NA values to interpolate
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7 weeks ago Macsue • 0
0
votes
1
reply
178
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No output from read.bismark with bismark cov.files
bsseq methylation
updated 8 weeks ago by 66k • written 8 weeks ago by • 0
0
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7
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465
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Internet connection for Bioconductor packages in Rstudio in Iran...
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8 weeks ago needNGS • 0
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3
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351
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Statistical test
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1
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5
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386
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fgsea fork
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updated 8 weeks ago by 66k • written 8 weeks ago by • 0
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0
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130
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How to extract the coordinate of dba.plotPCA?
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8 weeks ago feather-W • 0
0
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0
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133
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PCA plot for normalized counts using Diffbind
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8 weeks ago Ankit ▴ 20
0
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0
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119
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8 weeks ago Pierre Lindenbaum ▴ 10
2
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3
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310
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miRTarRnaseq library
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updated 8 weeks ago by ▴ 20 • written 10 weeks ago by • 0
0
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1
reply
216
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Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 9 weeks ago by ★ 4.0k • written 10 weeks ago by • 0
1
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1
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291
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FCS3.2 reading
flowWorkspace flowCore CytoML
updated 9 weeks ago by ▴ 350 • written 3 months ago by ▴ 30
3
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3
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481
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Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
scater runPCA
updated 9 weeks ago by ▴ 160 • written 9 weeks ago by • 0
0
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2
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598
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ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 9 weeks ago by • 0 • written 12 months ago by • 0
0
votes
0
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157
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Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals GenomicRanges
9 weeks ago gshweta95 • 0
2
votes
1
reply
255
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Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
updated 9 weeks ago by ★ 4.0k • written 9 weeks ago by ▴ 10
0
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2
replies
328
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Error in msaFun Cannot open input file. No alignment!
msa
written 10 weeks ago by ▴ 30
0
votes
0
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Can i retrieve domain information from PANTHER ID's using PANTHER.db ?
PANTHER.db
9 weeks ago nromerov • 0
1
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3
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284
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cBioPortalData loads empty z-score expression table
cBioPortalData
updated 9 weeks ago by 700 • written 9 weeks ago by • 0
1
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4
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EDAseq to normalise for both gene-length and GC-content
norma EDASeq EDA Normalization
10 weeks ago • updated 9 weeks ago samuel.channon • 0
403 results • Page 2 of 9
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Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
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FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
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If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
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Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
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Reduce the number of nodes appear in the cnetplot of clusterprofiler
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