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shepherl
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12
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0
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323
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Tim Peters
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s.malik
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5.6k
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written 5.4 years ago by
Guido Hooiveld
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shepherl
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jon.klonowski
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Filipe
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3
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11
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5.0k
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Guido Hooiveld
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Alberto
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164
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3 months ago
hayleyw
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2
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28
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4.4k
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updated 5 months ago by
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Manmohit
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Guido Hooiveld
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written 6 months ago by
BS
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568
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696
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2
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2
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765
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votes
14
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4.8k
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7.2 years ago • updated 20 months ago
Jenny Drnevich
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4.2k
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Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
21 months ago • updated 20 months ago
sandmann.t
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70
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21
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10
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written 3.5 years ago by
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updated 21 months ago by
shepherl
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2.4 years ago • updated 23 months ago
nattzy94
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2.1 years ago
junliqilinpan
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2
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1.9k
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4
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6
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2.3k
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updated 2.2 years ago by
Gordon Smyth
50k
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972
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2.3 years ago
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3
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1.2k
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Mike Smith
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10
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2.3k
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updated 2.5 years ago by
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written 2.5 years ago by
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604
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2.7 years ago
Francois Marchildon
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updated 3.0 years ago by
Guido Hooiveld
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ju.ry
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1.1k
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3.1 years ago
shepherl
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3.4 years ago • updated 3.3 years ago
rohitsatyam102
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updated 3.3 years ago by
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written 7.6 years ago by
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2.0k
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3.4 years ago
rahnaman
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3.5 years ago
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60
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3.7 years ago
ben.ponv
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2.5k
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written 3.7 years ago by
Didi
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3.7 years ago
Johannes Rainer
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6.2k
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shepherl
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written 3.7 years ago by
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660
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updated 3.8 years ago by
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written 3.8 years ago by
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3
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updated 3.9 years ago by
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written 3.9 years ago by
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670
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updated 4.0 years ago by
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written 4.0 years ago by
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5
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4.2 years ago
Michael Love
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936
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dmgatti
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updated 4.7 years ago by
shepherl
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written 4.7 years ago by
konstantinos.bogias
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44
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updated 4.8 years ago by
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written 4.9 years ago by
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983
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written 5.0 years ago by
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Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★
4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level
edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
•
0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★
4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★
4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
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Thank for your response. It is Illumina 450 K. I use this code
```{r }
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
annotat…
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