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Showing :
Biomart
•
reset
2
votes
1
reply
1.8k
views
News:
Ensembl 91 is out!
ensembl
biomart
release
ensembl91
News
7.9 years ago
amonida
▴ 20
2
votes
5
replies
3.1k
views
getGeneLengthAndGCContent: "zero or more than one input sequence"
edaseq
normalization
hg38
biomart
org.db
updated 7.9 years ago by
davide risso
▴ 980 • written 7.9 years ago by
mark.ebbert
• 0
4
votes
5
replies
3.5k
views
biomaRt error: Query ERROR: caught BioMart::Exception: non-BioMart die():
biomart
8.0 years ago
Georg Otto
▴ 120
1
vote
0
replies
1.6k
views
Problem with biomarRt's getSequence() function
biomart
error
plants_mart
getSequence
8.0 years ago
vsn
▴ 10
3
votes
1
reply
1.6k
views
featureCounts in-built annotation doesn't match BioMart annotation?
rnaseq
annotation
featurecounts
biomart
updated 8.0 years ago by
James W. MacDonald
68k • written 8.0 years ago by
Jack
▴ 20
0
votes
3
replies
4.4k
views
Biomart ensembl annotation does not completely match my gene names
biomart
ensemblbiomart
updated 8.1 years ago by
Hervé Pagès
16k • written 8.1 years ago by
spr
▴ 10
0
votes
2
replies
1.1k
views
Accessing SNP datasets from NCBIM37 on biomaRt
biomart
updated 8.1 years ago by
Hervé Pagès
16k • written 8.1 years ago by
Rob
• 0
4
votes
1
reply
2.4k
views
Retrieving all genes related a go term
go
R
annotationdbi
biomart
updated 8.1 years ago by
James W. MacDonald
68k • written 8.1 years ago by
Stane
▴ 40
2
votes
3
replies
2.7k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 8.1 years ago by
James W. MacDonald
68k • written 8.1 years ago by
Glubbdrubb
• 0
1
vote
5
replies
3.3k
views
Get cytoband from refsnp ID using biomaRt in R
biomart
R
updated 8.1 years ago by
Mike Smith
★ 6.6k • written 8.1 years ago by
anajacintafernandes
▴ 20
1
vote
1
reply
1.5k
views
News:
Ensembl 90 has been released
ensembl
biomart
ensembl90
release
News
8.2 years ago
Thomas Maurel
▴ 800
0
votes
8
replies
3.2k
views
Isoforms detection using bioconductor
bioconductor
biomart
granges
rna-seq
updated 8.2 years ago by
Michael Lawrence
★ 11k • written 8.2 years ago by
seungjoon.kim
• 0
0
votes
3
replies
2.2k
views
errors with makeTxDbFromBiomart
biomart
genomicfeatures
maketxdbfrombiomart
ensembldb
ensDbFromGtf
updated 8.2 years ago by
Johannes Rainer
★ 2.1k • written 8.3 years ago by
Marie
• 0
1
vote
1
reply
1.7k
views
PANTHER.db function not found
pantherdb
goseq
biomart
updated 8.2 years ago by
Mike Smith
★ 6.6k • written 8.3 years ago by
krc3004
▴ 10
2
votes
1
reply
4.2k
views
biomaRt: list of hosts accessed
biomart
ensembl
updated 8.3 years ago by
Mike Smith
★ 6.6k • written 8.3 years ago by
ashok.ragavendran
▴ 10
5
votes
3
replies
4.7k
views
Please use the function 'listAttributes' to get valid attribute names
r
biomart
8.3 years ago
al14
• 0
2
votes
6
replies
2.9k
views
biomaRt Ensembl ID query returns NA in 'ensembl_gene_id', 'ensembl_transcript_id', etc.
biomart
ensembl
annotation
updated 8.3 years ago by
Mike Smith
★ 6.6k • written 8.3 years ago by
yura.grabovska
▴ 30
0
votes
3
replies
2.8k
views
Getting Differentially Expressed Genes from GOSeq Categories
goseq
gene ontology
biomart
annotate
category
updated 8.3 years ago by
b.nota
▴ 370 • written 8.4 years ago by
krc3004
▴ 10
0
votes
0
replies
1.5k
views
Reactome_gene IDs are pathway IDs in biomaRt
biomart
8.3 years ago
b.nota
▴ 370
0
votes
2
replies
1.4k
views
How to process ids containing "." in BiomaRt?
sce
biomart
annotation
updated 8.3 years ago by
Mike Smith
★ 6.6k • written 8.3 years ago by
linda.c.dansereau
• 0
0
votes
1
reply
1.0k
views
Biomart error on association gene symbols name
biomart
deseq2
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
jarod_v6@libero.it
▴ 40
3
votes
14
replies
4.8k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart
error
ensembl
bioconductor
ensembl mart
8.4 years ago
daniel.carbajo
• 0
1
vote
3
replies
2.1k
views
Subset of genes can find a term but whole set cannot
biomart
dose
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
ankita.mandal28529
• 0
1
vote
0
replies
1.5k
views
News:
Ensembl 89 has been released
ensembl
biomart
ensemblbiomart
ensembl89
News
8.4 years ago
Thomas Maurel
▴ 800
2
votes
2
replies
1.7k
views
around 2000 Affy probe set IDs cannot be mapped with Ensembl IDs by BiomaRt
microarray
annotation
biomart
hgu133a
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
haowang0806
• 0
3
votes
1
reply
2.4k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
5.2k
views
topGO gene names/ensembl IDs
topgo
biomart
deseq2
gene ontology
updated 8.5 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.5 years ago by
krc3004
▴ 10
0
votes
2
replies
907
views
BiomaRt xenopus tropicalis genome unavailable
bioconductor
biomart
xenopus
xenbase
updated 8.5 years ago by
Mike Smith
★ 6.6k • written 8.5 years ago by
annrosebright8
• 0
6
votes
7
replies
2.7k
views
Inconsistencies in biomart results
biomart
updated 8.5 years ago by
Mike Smith
★ 6.6k • written 9.2 years ago by
Laurent Gatto
1.6k
1
vote
8
replies
3.0k
views
BiomaRt package not working
biomart
getbm
8.5 years ago
Didi
▴ 10
3
votes
1
reply
1.9k
views
biomaRt error in useMart
biomart
updated 8.5 years ago by
Mike Smith
★ 6.6k • written 8.5 years ago by
vedran.franke
• 0
9
votes
9
replies
4.6k
views
biomaRt error when connecting to host
biomart
host
connection
updated 8.6 years ago by
Mike Smith
★ 6.6k • written 8.6 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
7
replies
4.1k
views
Retriving Annotation for HTA2.0 using biomRt
microarray
annotation
biomart
R
updated 8.6 years ago by
Thomas Maurel
▴ 800 • written 8.6 years ago by
Seymoo
• 0
2
votes
12
replies
3.7k
views
biomaRt does not return entrezgene id
bioconductor
biomart
entrez gene identifiers
ensembl
ensembl mart
updated 8.6 years ago by
Thomas Maurel
▴ 800 • written 8.6 years ago by
daniel.carbajo
• 0
6
votes
12
replies
7.0k
views
Error in getBM of biomaRt package
biomaRt
getBM
updated 8.6 years ago by
boris.steipe
• 0 • written 8.7 years ago by
rubi
▴ 110
1
vote
4
replies
2.0k
views
Query Error: biomaRt
biomart
bioconductor
8.6 years ago
Jaspreet Kaur
• 0
5
votes
5
replies
2.7k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
8.6 years ago
Thomas Maurel
▴ 800
1
vote
3
replies
1.1k
views
getBM to retrieve ensembl_gene_id's within a certain distance
biomart
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
emil
• 0
2
votes
4
replies
3.6k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 8.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.6 years ago by
br
• 0
0
votes
1
reply
1.1k
views
P-value in SNP attributes
biomart
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
Jaspreet Kaur
• 0
6
votes
6
replies
2.3k
views
GenomicFeatures makeTxDbFromBiomart fails with "unkown species" error
biomart
maketxdbfrombiomart
genomicfeatures
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
kaur.alasoo
▴ 30
2
votes
2
replies
1.8k
views
biomaRt's uniprot_swissprot and uniprot_sptrembl attributes
biomart
getDB
updated 8.7 years ago by
Mike Smith
★ 6.6k • written 8.7 years ago by
rubi
▴ 110
3
votes
13
replies
4.0k
views
Getting errors with makeTxDbFromBiomart
genomicfeatures
biomart
maketxdbfrombiomart
updated 8.8 years ago by
Thomas Maurel
▴ 800 • written 8.8 years ago by
Didi
▴ 10
1
vote
3
replies
1.0k
views
getBM functtion in biomaRt pacakge
biomart
updated 8.8 years ago by
Mike Smith
★ 6.6k • written 8.9 years ago by
Yongchao Ge
▴ 10
3
votes
12
replies
2.5k
views
adding attributes affects number of results returned
biomaRt
updated 4.5 years ago by
Mike Smith
★ 6.6k • written 8.8 years ago by
Marianna Foos
• 0
1
vote
1
reply
1.5k
views
Agilent BiomaRT getBM unavailable filter value
biomaRT
getBM
new version
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
u.seemab
• 0
5
votes
4
replies
3.6k
views
biomaRT GO-ID retreival showing different genes than AmiGO
biomart
go
updated 8.9 years ago by
Mike Smith
★ 6.6k • written 8.9 years ago by
snamjoshi87
▴ 40
0
votes
0
replies
1.4k
views
News:
Ensembl 87 is out!
ensembl
ensemble mart
ensembl mart
biomart
News
8.9 years ago
amonida
▴ 20
0
votes
2
replies
1.6k
views
class "AsIs" is not valid for @'dataset' in an object of class "Mart"; is(value, "character")
bug
biomart
8.9 years ago
Philip Lijnzaad
▴ 160
2
votes
2
replies
1.6k
views
Problem with getsequence() function in biomaRt
biomart
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
snamjoshi87
▴ 40
1,081 results • Page
8 of 22
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You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
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Thanks ! Do you have any idea how to do that ?
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