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Showing :
Epic
•
reset
2
votes
16
replies
2.5k
views
Methylation EPIC array: ChAMP package-champ.load added probes?
methylation
epic
champ
champ.load()
Methylation array
updated 4.3 years ago by
Yuan Tian
▴ 280 • written 4.3 years ago by
Ankit
▴ 20
0
votes
5
replies
2.2k
views
Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon
methylation
EPIC
normalization
7.3 years ago
Wade Davis
▴ 60
0
votes
2
replies
2.1k
views
ChAMP Normalization on EPIC Methylation Data
ChAMP
Normalization
FunctionalNormalization
methylation
EPIC
5.6 years ago
yuabrahamliu
• 0
2
votes
3
replies
2.1k
views
"Seems your IDAT file not from one Array"
EPIC
methylation
ChAMP
updated 6.1 years ago by
yura.grabovska
▴ 30 • written 6.1 years ago by
david.ch
• 0
0
votes
3
replies
2.0k
views
Unknown annotation in the RGChannelSetExtended object
minfi
idat
annotation
EPIC
updated 7.1 years ago by
xue.zhang
• 0 • written 7.2 years ago by
Frocha
▴ 20
0
votes
1
reply
2.0k
views
News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
7.7 years ago
Yuan Tian
▴ 90
0
votes
2
replies
1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.0 years ago by
Guido Hooiveld
★ 3.9k • written 7.0 years ago by
Ellen O
• 0
0
votes
1
reply
1.8k
views
How to analyse 450k and EPIC methylation data together?
minfi
450k
EPIC
analysis
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
maduran
• 0
5
votes
9
replies
1.7k
views
limma Multi-level Experiments correcting for continuous covariates
limma
epic
methylation
limma design matrix
covariates
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
c.bettencourt
• 0
1
vote
2
replies
1.6k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
7.8 years ago
m.van_iterson
▴ 20
0
votes
3
replies
1.6k
views
Minfi error when using force=TRUE in read.metharray
minfi
methylation
epic
5.7 years ago
jbar3141
• 0
0
votes
4
replies
1.6k
views
WGCNA soft threshold with methylation data but no scale-free topology
methylation
EPIC
scale-free topology
WGCNA
updated 15 months ago by
shuo
• 0 • written 4.7 years ago by
enora.fremy
• 0
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate
bumphunter
methylation
epic
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
yoursbassanio
▴ 10
0
votes
0
replies
1.4k
views
News:
ChAMP2 is online
epigenetics
EPIC
450K
ChAMP
News
7.6 years ago
Yuan Tian
▴ 90
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation
Epic
annotation
DMRcate
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
yoursbassanio
▴ 10
1
vote
3
replies
1.4k
views
Skewed beta-distribution from Methylation EPIC array data
ChAMP
EPIC
Illumina
Methylation
4.3 years ago
erwin.tomasich
▴ 10
2
votes
1
reply
1.3k
views
EPIC methylation array - analysis with ChAMP - how to export bed/wig file to view in UCSC/IGV?
methylation
epic
champ
updated 5.4 years ago by
Yuan Tian
▴ 280 • written 5.4 years ago by
D
▴ 10
0
votes
2
replies
1.2k
views
error using EPIC early access version arrays with minfi
epic
minfi
read.metharray
software error
7.9 years ago
mcastrod
• 0
1
vote
3
replies
1.2k
views
Obtaining annotated results from rnbeads
rnbeads
EPIC
updated 4.9 years ago by
mscherer
▴ 50 • written 4.9 years ago by
Mark Dunning
★ 1.1k
0
votes
3
replies
1.2k
views
Limma for cell components effect on response
450k
EPIC
minfi
limma
cell components
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
antgomo
• 0
0
votes
0
replies
1.1k
views
Interpretation of control strip and beta density plots for Illumina methylation array data using minFi
minfi
methylation
EPIC
5.8 years ago
sichan
• 0
0
votes
0
replies
1.1k
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.1 years ago
rmf
▴ 20
0
votes
2
replies
1.0k
views
Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
methylumi
minfi
microarray
epic
4.1 years ago • updated 3.5 years ago
Nala
• 0
2
votes
1
reply
985
views
lumi: Importing Methylation EPIC IDAT files
lumi
EPIC
Methylation
4.0 years ago
Zach Roe
▴ 10
1
vote
1
reply
945
views
SVA paired samples
SVA
EPIC
methylation
limma
updated 4.2 years ago by
James W. MacDonald
65k • written 4.2 years ago by
whyw6948
• 0
0
votes
0
replies
907
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.7 years ago
peter.fransquet
• 0
0
votes
0
replies
824
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.1 years ago
rmf
▴ 20
1
vote
1
reply
822
views
Issue with ChAMP DMP.GUI
ChAMP
champ
methylation
EPIC
updated 4.3 years ago by
Yuan Tian
▴ 90 • written 4.3 years ago by
cherlyn.t
• 0
0
votes
0
replies
478
views
combat for batch effect correction in EPIC array data
Epigenetics
combat
EPIC
13 months ago
Jitendra
▴ 10
29 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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