Showing : GenomeInfoDb • reset
1
vote
3
replies
635
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 10 weeks ago by • 0
2
votes
4
replies
706
views
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Install GenomeInfoDbData GenomeInfoDb
updated 5 months ago by 67k • written 5 months ago by ▴ 20
2
votes
4
replies
872
views
seqlevelsStyle() not working
ensembldb genomei GenomeInfoDb
written 9 months ago by ▴ 70
0
votes
1
reply
1.3k
views
package ‘GenomeInfoDb’ could not be loaded
GenomeInfoDb GenomeInfoDbData
updated 20 months ago by ★ 4.5k • written 20 months ago by • 0
16
votes
10
replies
7.2k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
GenomeInfoDb
updated 21 months ago by 16k • written 3.0 years ago by ▴ 20
1
vote
3
replies
3.1k
views
Unable to GetGRangesFromEnsDb
single GenomeInfoDb
updated 22 months ago by • 0 • written 2.8 years ago by • 0
1
vote
5
replies
1.6k
views
Unable to load mm10 genome for use with GenomicDistributions package
GenomeInfoDb GenomeInfoDbData GenomicDistributionsData GenomicDistributions
2.4 years ago rashford • 0
0
votes
1
reply
1.5k
views
GenomeInfoDbData cannot install in R and warning had non-zero exit status
GenomeInfoDb
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
1
vote
4
replies
1.4k
views
seqinfo got changed after `library(rtracklayer)`
rtracklayer GenomeInfoDb
2.9 years ago Ge Tan ▴ 20
3
votes
2
replies
1.3k
views
Please allow integers in `numeric` format in `seqlengths`
GenomeInfoDb
updated 2.9 years ago by 16k • written 2.9 years ago by ▴ 180
0
votes
3
replies
1.6k
views
Permanent error in installing GenomeInfoDb
GenomeInfoDb
3.0 years ago AZ ▴ 30
0
votes
2
replies
2.7k
views
GenomeInfoDb fails to install
zip GenomeInfoDb
updated 3.2 years ago by 700 • written 3.2 years ago by • 0
3
votes
2
replies
3.9k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m31) is not TRUE
GenomeInfoDb
updated 3.3 years ago by ▴ 20 • written 3.4 years ago by ▴ 10
0
votes
0
replies
1.1k
views
motifBreakR error with custom BSgenome
GenomeInfoDb motifbreakR
3.6 years ago • updated 3.5 years ago Chris Seidel ▴ 80
3
votes
4
replies
3.2k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
3.8 years ago • updated 3.7 years ago Dan ▴ 20
0
votes
2
replies
1.2k
views
Error in GenomeInfoDb:::makeNewSeqnames
GenomeInfoDb ggbio
3.8 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
692
views
RNA gene expression data retrieval for breast cancer subtypes
RNASeqData GenomeInfoDb
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
2
votes
2
replies
1.7k
views
How does one modify a single value of a field in a seqinfo object?
GenomicRanges GenomeInfoDb BSgenome isCircular
updated 4.0 years ago by 16k • written 4.1 years ago by ▴ 80
4
votes
3
replies
1.8k
views
OrganismDbi throws error for Oryza Sativa indica org.db preparation
GenomeInfoDb OrganismDbi biomaRt
updated 4.0 years ago by 67k • written 4.0 years ago by ▴ 20
1
vote
2
replies
1.3k
views
Error in csaw::windowCounts when using readParam
csaw GenomeInfoDb
updated 4.2 years ago by ★ 28k • written 4.2 years ago by ▴ 50
2
votes
3
replies
2.0k
views
Error "cannot map the following UCSC seqlevel(s) to an NCBI seqlevel" in package GenomeDbInfo
genomeinfodb hg19 ucsc seqlevel genomicfeatures
updated 4.6 years ago by 67k • written 4.6 years ago by ▴ 100
3
votes
5
replies
1.2k
views
Information on genomic sequences via Seqinfo failing
GenomeInfoDb
updated 4.6 years ago by 16k • written 4.6 years ago by ★ 4.3k
0
votes
7
replies
3.3k
views
Assembly report error for hg19 in GenomeInfoDb
software error GenomeInfoDb HTGTS Transloc-pipeline TranslocHotspots.R
updated 3.6 years ago by ▴ 130 • written 5.1 years ago by • 0
8
votes
11
replies
3.5k
views
GenomeInfoDb's Seqinfo() error on hg38
genomeinfodb
updated 5.7 years ago by 16k • written 5.7 years ago by 42k
0
votes
1
reply
2.0k
views
Issue using ballgown
software error ballgown genomeinfodbdata genomeinfodb
updated 6.1 years ago by 67k • written 6.1 years ago by • 0
7
votes
5
replies
2.1k
views
Strange error in bsseq when trying to assign seqinfo
bsseq genomeinfodb genomicranges seqinfo
written 6.5 years ago by ▴ 140
1
vote
1
reply
1.2k
views
seqnames versus chrom
BiocGen rtracklayer genomeinfodb
updated 6.8 years ago by ★ 11k • written 6.8 years ago by • 0
0
votes
3
replies
6.2k
views
Trouble installing DESeq / GenomeInfoDb
deseq2 genomeinfodb
updated 7.3 years ago by 67k • written 7.3 years ago by • 0
0
votes
1
reply
1.6k
views
errotr in genome infodb
software error roar bioconductor genomeinfodb
7.3 years ago praveenhcu131 • 0
0
votes
1
reply
1.3k
views
seqlevels/keepSeqLevels should set default pruning.mode by a getOption call
genomeinfodb
updated 7.4 years ago by 16k • written 7.4 years ago by ▴ 10
0
votes
1
reply
1.1k
views
GenomeInfoDb: where are the genome patches?
seqnames genomeinfodb
updated 7.4 years ago by 16k • written 7.4 years ago by ▴ 10
0
votes
2
replies
1.4k
views
seqlevelsStyle for chrY in Drosophila?
genomeinfodb dmel seqlevelsstyle
updated 7.4 years ago by ▴ 50 • written 7.4 years ago by ▴ 140
0
votes
7
replies
2.4k
views
regionMatrix for derfinder crashes with seqnames issue on non-human data
derfinder GenomeInfoDb GenomicRanges
7.5 years ago Wayne • 0
1
vote
3
replies
1.7k
views
GenomeInfoDb::Seqinfo() error 404 on the function
GenomeInfoDb Seqinfo 404 error
7.8 years ago • updated 7.7 years ago bastien.herve • 0
5
votes
3
replies
3.4k
views
keepSeqlevels for GRangesList: drop elements with multiple seqnames
GenomeInfoDb keepSeqlevels
updated 8.0 years ago by ★ 6.8k • written 8.0 years ago by ▴ 40
4
votes
9
replies
4.9k
views
Is it possible to read bigwig files with rtracklayer over https? Comes down to GenomeInfoDb::seqinfo()
rtracklayer genomeinfodb
8.5 years ago Leonardo Collado Torres ★ 1.1k
8
votes
7
replies
3.9k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 10
2
votes
5
replies
1.9k
views
GenomeInfoDb::extractSeqlevelsByGroup() on 'Canis familiaris'
genomeinfodb canis familiaris
updated 9.0 years ago by 16k • written 9.0 years ago by ★ 3.4k
0
votes
0
replies
1.4k
views
'GenomeInfoDb' error in the cn.MOPS Package
cnv genomeinfodb
9.3 years ago voksdvoks • 0
6
votes
2
replies
5.6k
views
Get sequences for GRCh38 genome based on TxDb object locations
bsgenome genomeinfodb transcriptdb
updated 9.9 years ago by 16k • written 9.9 years ago by ▴ 760
0
votes
4
replies
1.9k
views
keepStandardChromosomes doesn't respect ordering
genomeinfodb
updated 10.0 years ago by ▴ 390 • written 10.0 years ago by 67k
0
votes
2
replies
2.0k
views
GenomeinfoDB
Mus musculus GenomeInfoDb Mus musculus GenomeInfoDb
updated 10.4 years ago by ▴ 390 • written 10.4 years ago by ★ 13k
42 results • Page 1 of 1
Recent ...
Replies
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k
`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.
Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0
Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…
Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k
Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.
Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k
You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…
Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0
Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…
Votes
Answer: DESeq Input from Salmon + tximport/tximeta
Answer: featureCounts segmentation fault with large chromosomes
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Awards • All
Popular Question to john • 0
Popular Question to Gordon Smyth 51k
Popular Question to James W. MacDonald 67k
Popular Question to abadgerw • 0
Commentator to Mike Smith ★ 6.6k
Locations • All
Denmark, 1 minute ago
Germany, 2 minutes ago
Austria, 15 minutes ago
Germany, 27 minutes ago
WEHI, Melbourne, Australia, 28 minutes ago
Traffic: 827 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6