Showing : RNA • reset
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA RNASeqPower DEGseq
updated 1 day ago by 51k • written 2 days ago by • 0
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3
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523
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Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
4 months ago gallantk5 • 0
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5
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1.0k
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Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 9 months ago by 67k • written 9 months ago by • 0
0
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1
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553
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Running Deseq2 with all samples vs samples for each comparison separately
RNA DESeq2
updated 10 months ago by 42k • written 10 months ago by • 0
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2
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1.5k
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Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 19 months ago by ★ 2.1k • written 19 months ago by • 0
3
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6
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2.6k
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Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
2.0 years ago Sara • 0
0
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0
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673
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Correct GFF3 translation for FeatureCounts
RNASeq FeatureCounts Rna
2.1 years ago rridley3 • 0
1
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1
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919
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Confused about design for RNA seq experiment
RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign
updated 2.2 years ago by ★ 4.5k • written 2.2 years ago by ▴ 30
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0
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929
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Job: Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData RNA DifferentialExpression
2.3 years ago António Miguel de Jesus Domingues ▴ 510
0
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2
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1.0k
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Rsubread align --R session aborts
RNA Alignment Rsubread
2.3 years ago • updated 2.2 years ago sreekalasn • 0
2
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1
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1.3k
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Error in RNAseq123 analysis, unexpected symbol.
RNAseq123 Rna
updated 2.4 years ago by 51k • written 2.4 years ago by • 0
1
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2
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2.0k
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Is it necessary to standardize Combat in R?
RNA Combat sva R
2.5 years ago takemoto • 0
1
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1
reply
943
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Description of the headers obtained from the Eligos2 output
methylation RNA native epitranscriptomics
updated 2.7 years ago by ▴ 100 • written 2.7 years ago by ▴ 10
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1.0k
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Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.9 years ago by ★ 4.5k • written 2.9 years ago by • 0
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774
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Cross-cultivar RNA-seq analysis
RNA Normalization
3.6 years ago nancy • 0
0
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4
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1.7k
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Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
3.6 years ago Nirad ▴ 10
0
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3
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2.6k
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Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 4.0 years ago by 51k • written 4.0 years ago by ▴ 10
4
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3
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2.8k
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 4.1 years ago by 67k • written 4.1 years ago by ▴ 20
2
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7
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1.5k
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Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 4.5 years ago by 67k • written 4.5 years ago by • 0
1
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1
reply
978
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How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 4.6 years ago by 42k • written 4.6 years ago by • 0
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6
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1.6k
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Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 4.7 years ago by 42k • written 4.7 years ago by • 0
0
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0
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978
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
5.4 years ago jmaanaki • 0
1
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1
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1.6k
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how to filter genes in significant module?
RNA WGCNA filter
5.4 years ago modarzi ▴ 10
0
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2
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1.0k
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DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 5.6 years ago by 42k • written 5.6 years ago by ▴ 10
2
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1
reply
944
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DESeq2 statistic and design
deseq2 RNA
updated 5.6 years ago by 42k • written 5.6 years ago by ▴ 10
5
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5
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1.7k
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Association analysis between gene expression and Phenotype
rna singlecell limma
updated 5.7 years ago by ★ 28k • written 5.7 years ago by ▴ 20
2
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3
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1.5k
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Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 5.7 years ago by ★ 13k • written 5.7 years ago by ▴ 20
1
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0
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1.1k
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Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
6.1 years ago l.brown ▴ 10
0
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0
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1.1k
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R code for finding wobble/redundant positions in an RNA string
r code rna wobble
6.8 years ago fawazfebin ▴ 60
0
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1
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1.1k
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 7.3 years ago by 42k • written 7.3 years ago by ▴ 20
0
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1
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1.5k
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RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 7.3 years ago by 42k • written 7.3 years ago by ▴ 20
1
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1
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1.8k
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Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 7.5 years ago by ▴ 420 • written 7.5 years ago by ▴ 30
5
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4
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1.5k
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 7.5 years ago by • 0 • written 7.5 years ago by ▴ 40
3
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6
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2.1k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.6 years ago by 67k • written 7.6 years ago by ▴ 20
6
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5
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4.3k
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Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 7.6 years ago by 51k • written 7.6 years ago by ▴ 20
0
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0
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1.7k
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Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
7.7 years ago Walter F. Baumann ▴ 10
3
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1
reply
1.8k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 8.2 years ago by ★ 28k • written 8.2 years ago by • 0
0
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4
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5.2k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 8.7 years ago by 42k • written 8.7 years ago by • 0
0
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2
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1.4k
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Normalizzation indipentent data from RNAAeq experiment
rna normalization
10.1 years ago aristotele_m ▴ 40
39 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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