Bioconductor RNA

Showing : RNA • reset

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383

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RNA RNASeqPower DEGseq

written 4 months ago by Jonathan • 0

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671

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GEO rnaseqGene RNA

8 months ago gallantk5 • 0

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1.3k

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fgsea rna

updated 13 months ago by James W. MacDonald 68k • written 13 months ago by Gordon • 0

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685

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RNA DESeq2

updated 14 months ago by Michael Love 43k • written 14 months ago by manuel • 0

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1.8k

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biomaRt ensembldb RNA ensembl

updated 23 months ago by Johannes Rainer ★ 2.1k • written 24 months ago by Christopher • 0

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3.0k

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Log2 edgeR RNA limma Normalization

2.4 years ago • updated 2.3 years ago Sara • 0

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757

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RNASeq FeatureCounts Rna

2.4 years ago rridley3 • 0

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 2.5 years ago by ATpoint ★ 4.7k • written 2.5 years ago by Mohamed ▴ 30

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998

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MassSpectrometryData RNA DifferentialExpression

2.6 years ago António Miguel de Jesus Domingues ▴ 510

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1.1k

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RNA Alignment Rsubread

2.6 years ago sreekalasn • 0

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1.4k

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RNAseq123 Rna

updated 2.8 years ago by Gordon Smyth 52k • written 2.8 years ago by Mikołaj Mierzejewski • 0

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2.2k

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RNA Combat sva R

2.8 years ago takemoto • 0

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1.0k

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methylation RNA native epitranscriptomics

updated 3.0 years ago by tcalvo ▴ 100 • written 3.0 years ago by megha.hs28 ▴ 10

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1.1k

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tximport rna rnaseqGene biomaRt

updated 3.2 years ago by ATpoint ★ 4.7k • written 3.2 years ago by st3472 • 0

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842

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RNA Normalization

3.9 years ago nancy • 0

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1.9k

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limma edgeR rna

3.9 years ago Nirad ▴ 10

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2.8k

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edgeR RNASeq

updated 4.3 years ago by Gordon Smyth 52k • written 4.3 years ago by weichengz ▴ 10

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3.2k

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annotation rna

updated 4.4 years ago by James W. MacDonald 68k • written 4.4 years ago by anthony.nash ▴ 20

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affy rna hta2.0 r

updated 4.8 years ago by James W. MacDonald 68k • written 4.8 years ago by Marco_aurelio • 0

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1.1k

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deseq2 RNA

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by agsousa • 0

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1.8k

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deseq2 RNA RNASeq

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by stephen.hartley • 0

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1.1k

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single cell RNA Data analysis Bioinformatics Job

5.7 years ago jmaanaki • 0

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1.8k

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RNA WGCNA filter

5.7 years ago modarzi ▴ 10

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1.1k

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RNA DESeq2

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by Merlin ▴ 10

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1.0k

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deseq2 RNA

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by Merlin ▴ 10

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1.8k

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rna singlecell limma

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by hrishi27n ▴ 20

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1.9k

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rna-seq rna

updated 6.0 years ago by Steve Lianoglou ★ 13k • written 6.0 years ago by Anthony Nash ▴ 20

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1.2k

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computational biology molecular biology RNA r-loop ncRNA Job

6.4 years ago l.brown ▴ 10

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1.2k

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r code rna wobble

7.1 years ago fawazfebin ▴ 60

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1.2k

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RNA rnaseq deseq2

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by hrishi27n ▴ 20

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1.6k

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deseq2 RNA rnaseq

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by hrishi27n ▴ 20

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2.2k

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outliers rna microarray

updated 7.8 years ago by chris86 ▴ 420 • written 7.8 years ago by bhgyu ▴ 30

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1.6k

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DGE rnaseq RNA edger

updated 7.9 years ago by londonflavido • 0 • written 7.9 years ago by Pietro ▴ 40

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2.3k

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RNA rna-seq science bioinformatics

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by hrishi27n ▴ 20

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4.6k

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RNA limma rsem edgeR

updated 7.9 years ago by Gordon Smyth 52k • written 7.9 years ago by hrishi27n ▴ 20

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1.7k

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R bioconductor RNA mRNA RNA binding proteins

8.0 years ago Walter F. Baumann ▴ 10

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1.9k

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EdgeR deseq2 RNA differential expression

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by tyssowski • 0

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5.4k

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RNA rnaseq Covariate adjustment deseq

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by sjs0282 • 0

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1.5k

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rna normalization

10.5 years ago aristotele_m ▴ 40

39 results • Page 1 of 1

Recent ...

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k