Bioconductor RNA

Showing : RNA • reset

votes

replies

554

views

RNA RNASeqPower DEGseq

written 11 months ago by Jonathan • 0

votes

replies

907

views

GEO rnaseqGene RNA

15 months ago gallantk5 • 0

votes

replies

1.8k

views

fgsea rna

updated 20 months ago by James W. MacDonald 68k • written 21 months ago by Gordon • 0

votes

840

views

RNA DESeq2

updated 21 months ago by Michael Love 43k • written 21 months ago by manuel • 0

votes

replies

2.4k

views

biomaRt ensembldb RNA ensembl

updated 2.6 years ago by Johannes Rainer ★ 2.1k • written 2.6 years ago by Christopher • 0

votes

replies

3.4k

views

Log2 edgeR RNA limma Normalization

3.0 years ago • updated 2.9 years ago Sara • 0

votes

replies

950

views

RNASeq FeatureCounts Rna

3.0 years ago rridley3 • 0

vote

1.2k

views

RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 3.1 years ago by ATpoint ★ 5.0k • written 3.1 years ago by Mohamed ▴ 30

votes

replies

1.2k

views

MassSpectrometryData RNA DifferentialExpression

3.2 years ago António Miguel de Jesus Domingues ▴ 510

votes

replies

1.3k

views

RNA Alignment Rsubread

3.2 years ago sreekalasn • 0

votes

1.7k

views

RNAseq123 Rna

updated 3.4 years ago by Gordon Smyth 53k • written 3.4 years ago by Mikołaj Mierzejewski • 0

vote

replies

2.5k

views

RNA Combat sva R

3.5 years ago • updated 3.4 years ago takemoto • 0

vote

1.2k

views

methylation RNA native epitranscriptomics

updated 3.7 years ago by tcalvo ▴ 100 • written 3.7 years ago by megha.hs28 ▴ 10

votes

1.4k

views

tximport rna rnaseqGene biomaRt

updated 3.8 years ago by ATpoint ★ 5.0k • written 3.8 years ago by st3472 • 0

votes

replies

954

views

RNA Normalization

4.5 years ago nancy • 0

votes

replies

2.1k

views

limma edgeR rna

4.6 years ago Nirad ▴ 10

votes

replies

3.1k

views

edgeR RNASeq

updated 5.0 years ago by Gordon Smyth 53k • written 5.0 years ago by weichengz ▴ 10

votes

replies

3.5k

views

annotation rna

updated 5.0 years ago by James W. MacDonald 68k • written 5.1 years ago by anthony.nash ▴ 20

votes

replies

1.8k

views

affy rna hta2.0 r

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by Marco_aurelio • 0

vote

1.2k

views

deseq2 RNA

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by agsousa • 0

votes

replies

2.1k

views

deseq2 RNA RNASeq

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by stephen.hartley • 0

votes

replies

1.2k

views

single cell RNA Data analysis Bioinformatics Job

6.3 years ago jmaanaki • 0

vote

2.0k

views

RNA WGCNA filter

6.3 years ago modarzi ▴ 10

votes

replies

1.2k

views

RNA DESeq2

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by Merlin ▴ 10

votes

1.1k

views

deseq2 RNA

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by Merlin ▴ 10

votes

replies

2.1k

views

rna singlecell limma

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Bioinformatician_R ▴ 20

votes

replies

2.2k

views

rna-seq rna

updated 6.6 years ago by Steve Lianoglou ★ 13k • written 6.6 years ago by Anthony Nash ▴ 20

vote

replies

1.3k

views

computational biology molecular biology RNA r-loop ncRNA Job

7.0 years ago l.brown ▴ 10

votes

replies

1.4k

views

r code rna wobble

7.7 years ago fawazfebin ▴ 60

votes

1.4k

views

RNA rnaseq deseq2

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by Bioinformatician_R ▴ 20

votes

1.7k

views

deseq2 RNA rnaseq

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by Bioinformatician_R ▴ 20

vote

2.4k

views

outliers rna microarray

updated 8.4 years ago by chris86 ▴ 420 • written 8.4 years ago by bhgyu ▴ 30

votes

replies

1.8k

views

DGE rnaseq RNA edger

updated 8.5 years ago by londonflavido • 0 • written 8.5 years ago by Pietro ▴ 40

votes

replies

2.5k

views

RNA rna-seq science bioinformatics

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by Bioinformatician_R ▴ 20

votes

replies

4.9k

views

RNA limma rsem edgeR

updated 8.6 years ago by Gordon Smyth 53k • written 8.6 years ago by Bioinformatician_R ▴ 20

votes

replies

1.8k

views

R bioconductor RNA mRNA RNA binding proteins

8.6 years ago Walter F. Baumann ▴ 10

votes

2.0k

views

EdgeR deseq2 RNA differential expression

updated 9.1 years ago by Aaron Lun ★ 29k • written 9.1 years ago by tyssowski • 0

votes

replies

5.6k

views

RNA rnaseq Covariate adjustment deseq

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by sjs0282 • 0

votes

replies

1.6k

views

rna normalization

11.1 years ago aristotele_m ▴ 40

39 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Awards • All