Showing : RNASeq • reset
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GO analysis in R vs website
GO RNASeq
2.9 years ago Nitro • 0
1
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4
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1.4k
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Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq variancePartition edgeR dream
2.9 years ago DH • 0
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1.3k
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Job: Seeking collaborator/contractor (paid) for Bioconductor package development
RNASeq JobPosting
2.9 years ago Jamie Walters ▴ 10
3
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2
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1.6k
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Batch question Bulk RNA-Seq
BatchEffect RNASeq
2.9 years ago chf • 0
1
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3
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2.0k
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler RNASeq
updated 21 months ago by ★ 1.2k • written 2.9 years ago by ▴ 10
1
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1
reply
984
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Subsetting DESeq when different cell types
DESeq2 RNASeq
updated 2.9 years ago by ★ 5.0k • written 2.9 years ago by ▴ 20
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7
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2.5k
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Weird dispersion and volcano plots in DEA with paired samples
DESeq2 RNASeq
updated 2.9 years ago by 43k • written 2.9 years ago by • 0
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3
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1.5k
views
PCA subset of genes vs DE
DESeq2 RNASeq
written 2.9 years ago by ▴ 20
2
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5
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2.8k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 2.9 years ago by • 0
0
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3
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1.5k
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Understanding edgeR differential expression results
Transcriptomics edgeR DifferentialExpression RNASeqData RNASeq
updated 2.9 years ago by 53k • written 2.9 years ago by • 0
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2
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1.8k
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combining multiple salmon runs after tximport
tximport RNASeq salmon
updated 2.9 years ago by ★ 5.0k • written 2.9 years ago by • 0
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2
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4.8k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 3.0 years ago by • 0
6
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11
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2.5k
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Error in running Dispersion estimation analysis in EdgeR
edgeR DifferentialExpression limma design RNASeq
3.0 years ago • updated 2.9 years ago mohammedtoufiq91 ▴ 10
2
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1
reply
804
views
EdgeR model matrix
edgeR RNASeq
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
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2
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2.1k
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Which genes are outliers in DESeq2?
DESeq2 RNAseq outlier
updated 3.0 years ago by ★ 5.0k • written 3.0 years ago by • 0
2
votes
10
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2.0k
views
edgeR: Usage of estimated dispersion from replicates for pools of the same experiment
edgeR RNAseq
updated 3.0 years ago by 53k • written 3.0 years ago by • 0
2
votes
2
replies
816
views
Calculate transcriptional heterogeneity for a condition using DESeq2
RNASeq
3.1 years ago • updated 3.0 years ago SciencyUsagi ▴ 10
0
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1
reply
3.1k
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Variance stabilization transformation (VST), blind=TRUE
DESeq2 Transcriptomics RNASeq
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
3
votes
3
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7.2k
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Why is it better to count genes at the exon-level using subread::featureCounts()?
RNASeq Rsubread featureCounts Quantification
updated 3.0 years ago by 53k • written 3.0 years ago by • 0
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3
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1.5k
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Gene TPM validity with STAR only quantification
RNASeq
written 3.1 years ago by ▴ 10
2
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5
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1.9k
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Create the design matrix
DEGseq edgeR RNASeq
3.1 years ago Mohammad • 0
4
votes
5
replies
6.8k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 3.0 years ago by 53k • written 3.1 years ago by ▴ 10
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3
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1.7k
views
DESeq2 Statistic - Padj NA
DESeq2 RNAseq123 rnaseq deseq2 metatranscriptomic
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
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0
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548
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A problem with Experimental Design for Limma
limma RNASeq
3.1 years ago ToReality • 0
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3
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2.5k
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Unusual MA and volcano plots?
DESeq2 RNASeq
written 3.1 years ago by ▴ 10
0
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1
reply
1.1k
views
Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 3.1 years ago by ★ 2.0k
1
vote
2
replies
1.3k
views
Extracting specific comparisons after fitting model in EdgeR
edgeR limma design RNASeq model.matrix
3.1 years ago mohammedtoufiq91 ▴ 10
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0
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569
views
RNA seq analysis
RNASeq
3.2 years ago lesseyl • 0
2
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3
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2.3k
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Error while reading rsem files in tximport
DESeq2 tximport rsem RNASeq tximportData
3.2 years ago mohammedtoufiq91 ▴ 10
0
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1
reply
1.3k
views
TCGA RNAseq Normalization
normalization RNASEQ Normalization TCGAutils TCGA
updated 3.2 years ago by ★ 5.0k • written 3.2 years ago by • 0
2
votes
4
replies
6.1k
views
Possibility of using TPM or FPKM values in edgeR for differential expression analysis?
DESeq2 R edgeR Normalization RNASeq
3.2 years ago mohammedtoufiq91 ▴ 10
0
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1
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1.3k
views
Interpretation of coefficient when using "~ grp + grp:ind.n + grp:cnd"
DESeq2 interaction coefficient LinearModel RNASeq
updated 3.2 years ago by 43k • written 3.2 years ago by ▴ 10
1
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1
reply
4.0k
views
Quantification of Genes with RSubread::featureCounts() at exon-level vs gene-level?
Subread RNASeq featureCounts quantification
updated 3.2 years ago by 53k • written 3.2 years ago by • 0
0
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4
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1.6k
views
Higher Dimensional RNASeq Clustering Significance
DESeq2 RNASeq PrincipalComponent pcaExplorer
written 3.2 years ago by • 0
1
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2
replies
1.5k
views
How to process and analyze Total RNA-Seq data?
DESeq2 R edgeR Normalization RNASeq
3.2 years ago mohammedtoufiq91 ▴ 10
0
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1
reply
1.6k
views
Trouble with importing transcript counts with Salmon
Salmon tximport RNAseq EdgeR
updated 3.2 years ago by ★ 5.0k • written 3.2 years ago by • 0
0
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0
replies
1.1k
views
Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
3.2 years ago whduke • 0
0
votes
3
replies
2.5k
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell RNASeq RNASeqData scRNAseq
updated 18 months ago by • 0 • written 3.2 years ago by • 0
0
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3
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3.4k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
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1
reply
828
views
Analysing only significant genes from differential expression analysis in a replication cohort
RNASeq
updated 3.2 years ago by ★ 1.4k • written 3.2 years ago by • 0
2
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3
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2.5k
views
Rsubread featureCounts outputs dozens of temp files, no counts
RNAseq R Rsubread featurecounts RNASeq
updated 3.2 years ago by 53k • written 3.2 years ago by • 0
0
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2
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1.3k
views
RNA-Seq Reads Count
DESeq2 htseq DEGseq RNASeq read
updated 3.2 years ago by 43k • written 3.2 years ago by • 0
3
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7
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3.0k
views
How to visaulize RNAseq data with edgeR, limma, ...?
r rnaseq DifferentialExpression limma edger
updated 3.2 years ago by 53k • written 3.2 years ago by • 0
1
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2
replies
1.6k
views
Design formula with batch effects DESeq2 "Not full rank matrix" error.
DESeq2 BatchEffect RNASeq
updated 3.3 years ago by ★ 1.4k • written 3.3 years ago by • 0
0
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0
replies
1.0k
views
Correct GFF3 translation for FeatureCounts
RNASeq FeatureCounts Rna
3.3 years ago rridley3 • 0
3
votes
16
replies
3.7k
views
Atena package - error (new user)
RNAseq R Atena
3.3 years ago • updated 3.0 years ago lalanis1 • 0
2
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5
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4.7k
views
DESeq2 with two continuous variable in a design
DESeq2 RNASeq R design
updated 3.3 years ago by 43k • written 4.6 years ago by • 0
0
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1
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2.1k
views
Does DeSeq2 make comparisons between all samples vs. all controls, or between matched samples and controls in different groups?
DESeq2 RNAseq bulk DifferentialExpression
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
0
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0
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979
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question on the p value for VIPER results by dorothea
RNAseq VIPER Doth
3.3 years ago snowmattin • 0
0
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0
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1.3k
views
WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network Transcriptomics MicrobiomeData RNASEQ WCGNA
3.3 years ago Julieta • 0
1,412 results • Page 4 of 29
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Navigating title tracks can be tricky, especially with rotation settings. I faced similar confusion [geometry dash free][1] when starting o…
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It sounds like your track title alignment issue comes from how the title panel anchors and rotates text. When you set rotation , the title …
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Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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