Bioconductor Rna

Showing : Rna • reset

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549

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RNA RNASeqPower DEGseq

written 11 months ago by Jonathan • 0

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902

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GEO rnaseqGene RNA

15 months ago gallantk5 • 0

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1.7k

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fgsea rna

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by Gordon • 0

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818

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RNA DESeq2

updated 21 months ago by Michael Love 43k • written 21 months ago by manuel • 0

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biomaRt ensembldb RNA ensembl

updated 2.6 years ago by Johannes Rainer ★ 2.1k • written 2.6 years ago by Christopher • 0

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Log2 edgeR RNA limma Normalization

2.9 years ago Sara • 0

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924

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RNASeq FeatureCounts Rna

3.0 years ago rridley3 • 0

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 3.1 years ago by ATpoint ★ 5.0k • written 3.1 years ago by Mohamed ▴ 30

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MassSpectrometryData RNA DifferentialExpression

3.2 years ago António Miguel de Jesus Domingues ▴ 510

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1.3k

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RNA Alignment Rsubread

3.2 years ago sreekalasn • 0

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RNAseq123 Rna

updated 3.4 years ago by Gordon Smyth 53k • written 3.4 years ago by Mikołaj Mierzejewski • 0

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RNA Combat sva R

3.4 years ago takemoto • 0

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methylation RNA native epitranscriptomics

updated 3.6 years ago by tcalvo ▴ 100 • written 3.6 years ago by megha.hs28 ▴ 10

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tximport rna rnaseqGene biomaRt

updated 3.8 years ago by ATpoint ★ 5.0k • written 3.8 years ago by st3472 • 0

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RNA Normalization

4.5 years ago nancy • 0

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limma edgeR rna

4.5 years ago Nirad ▴ 10

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3.1k

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edgeR RNASeq

updated 4.9 years ago by Gordon Smyth 53k • written 4.9 years ago by weichengz ▴ 10

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annotation rna

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by anthony.nash ▴ 20

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affy rna hta2.0 r

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by Marco_aurelio • 0

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deseq2 RNA

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by agsousa • 0

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deseq2 RNA RNASeq

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by stephen.hartley • 0

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single cell RNA Data analysis Bioinformatics Job

6.3 years ago jmaanaki • 0

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2.0k

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RNA WGCNA filter

6.3 years ago modarzi ▴ 10

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1.2k

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RNA DESeq2

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by Merlin ▴ 10

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1.1k

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deseq2 RNA

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by Merlin ▴ 10

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rna singlecell limma

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Bioinformatician_R ▴ 20

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rna-seq rna

updated 6.6 years ago by Steve Lianoglou ★ 13k • written 6.6 years ago by Anthony Nash ▴ 20

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computational biology molecular biology RNA r-loop ncRNA Job

7.0 years ago l.brown ▴ 10

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r code rna wobble

7.7 years ago fawazfebin ▴ 60

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1.4k

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RNA rnaseq deseq2

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by Bioinformatician_R ▴ 20

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1.7k

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deseq2 RNA rnaseq

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by Bioinformatician_R ▴ 20

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outliers rna microarray

updated 8.4 years ago by chris86 ▴ 420 • written 8.4 years ago by bhgyu ▴ 30

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1.7k

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DGE rnaseq RNA edger

updated 8.5 years ago by londonflavido • 0 • written 8.5 years ago by Pietro ▴ 40

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2.5k

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RNA rna-seq science bioinformatics

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by Bioinformatician_R ▴ 20

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4.9k

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RNA limma rsem edgeR

updated 8.5 years ago by Gordon Smyth 53k • written 8.5 years ago by Bioinformatician_R ▴ 20

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R bioconductor RNA mRNA RNA binding proteins

8.6 years ago Walter F. Baumann ▴ 10

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2.0k

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EdgeR deseq2 RNA differential expression

updated 9.1 years ago by Aaron Lun ★ 29k • written 9.1 years ago by tyssowski • 0

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RNA rnaseq Covariate adjustment deseq

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by sjs0282 • 0

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1.6k

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rna normalization

11.1 years ago aristotele_m ▴ 40

39 results • Page 1 of 1

Recent ...

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Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 10

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

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Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

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