Bioconductor Rna

Showing : Rna • reset

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244

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RNA RNASeqPower DEGseq

updated 4 weeks ago by Gordon Smyth 52k • written 4 weeks ago by Jonathan • 0

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557

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GEO rnaseqGene RNA

5 months ago gallantk5 • 0

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1.1k

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fgsea rna

updated 10 months ago by James W. MacDonald 67k • written 10 months ago by Gordon • 0

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591

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RNA DESeq2

updated 11 months ago by Michael Love 43k • written 11 months ago by manuel • 0

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1.6k

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biomaRt ensembldb RNA ensembl

updated 20 months ago by Johannes Rainer ★ 2.1k • written 20 months ago by Christopher • 0

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2.7k

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Log2 edgeR RNA limma Normalization

2.1 years ago Sara • 0

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687

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RNASeq FeatureCounts Rna

2.2 years ago rridley3 • 0

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935

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 2.3 years ago by ATpoint ★ 4.6k • written 2.3 years ago by Mohamed ▴ 30

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943

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MassSpectrometryData RNA DifferentialExpression

2.3 years ago António Miguel de Jesus Domingues ▴ 510

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1.0k

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RNA Alignment Rsubread

2.4 years ago • updated 2.3 years ago sreekalasn • 0

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1.3k

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RNAseq123 Rna

updated 2.5 years ago by Gordon Smyth 52k • written 2.5 years ago by Mikołaj Mierzejewski • 0

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2.1k

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RNA Combat sva R

2.6 years ago takemoto • 0

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957

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methylation RNA native epitranscriptomics

updated 2.8 years ago by tcalvo ▴ 100 • written 2.8 years ago by megha.hs28 ▴ 10

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1.1k

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tximport rna rnaseqGene biomaRt

updated 3.0 years ago by ATpoint ★ 4.6k • written 3.0 years ago by st3472 • 0

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792

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RNA Normalization

3.7 years ago nancy • 0

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1.7k

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limma edgeR rna

3.7 years ago Nirad ▴ 10

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2.7k

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edgeR RNASeq

updated 4.1 years ago by Gordon Smyth 52k • written 4.1 years ago by weichengz ▴ 10

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2.9k

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annotation rna

updated 4.2 years ago by James W. MacDonald 67k • written 4.2 years ago by anthony.nash ▴ 20

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1.5k

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affy rna hta2.0 r

updated 4.6 years ago by James W. MacDonald 67k • written 4.6 years ago by Marco_aurelio • 0

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1.0k

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deseq2 RNA

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by agsousa • 0

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1.7k

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deseq2 RNA RNASeq

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by stephen.hartley • 0

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1.0k

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single cell RNA Data analysis Bioinformatics Job

5.5 years ago jmaanaki • 0

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1.6k

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RNA WGCNA filter

5.5 years ago modarzi ▴ 10

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1.0k

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RNA DESeq2

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by Merlin ▴ 10

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954

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deseq2 RNA

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by Merlin ▴ 10

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1.7k

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rna singlecell limma

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by hrishi27n ▴ 20

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1.6k

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rna-seq rna

updated 5.7 years ago by Steve Lianoglou ★ 13k • written 5.7 years ago by Anthony Nash ▴ 20

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1.1k

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computational biology molecular biology RNA r-loop ncRNA Job

6.2 years ago l.brown ▴ 10

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1.1k

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r code rna wobble

6.9 years ago fawazfebin ▴ 60

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1.2k

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RNA rnaseq deseq2

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by hrishi27n ▴ 20

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1.5k

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deseq2 RNA rnaseq

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by hrishi27n ▴ 20

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1.9k

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outliers rna microarray

updated 7.6 years ago by chris86 ▴ 420 • written 7.6 years ago by bhgyu ▴ 30

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1.5k

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DGE rnaseq RNA edger

updated 7.6 years ago by londonflavido • 0 • written 7.6 years ago by Pietro ▴ 40

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2.1k

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RNA rna-seq science bioinformatics

updated 7.7 years ago by James W. MacDonald 67k • written 7.7 years ago by hrishi27n ▴ 20

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4.3k

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RNA limma rsem edgeR

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by hrishi27n ▴ 20

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1.7k

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R bioconductor RNA mRNA RNA binding proteins

7.8 years ago Walter F. Baumann ▴ 10

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1.8k

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EdgeR deseq2 RNA differential expression

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by tyssowski • 0

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5.3k

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RNA rnaseq Covariate adjustment deseq

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by sjs0282 • 0

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1.4k

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rna normalization

10.2 years ago aristotele_m ▴ 40

39 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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