Showing : S4Vectors • reset
11
votes
17
replies
2.3k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 17 months ago by ▴ 20 • written 17 months ago by ▴ 30
10
votes
10
replies
2.4k
views
Does package S4Vectors break ifelse?
S4Vectors ifelse
updated 6.9 years ago by ▴ 40 • written 8.8 years ago by ★ 3.0k
5
votes
3
replies
3.8k
views
Add new columns to DESeqResults from text file by matching rownames.
deseq2 deseq merge data frames cbind s4vectors
updated 6.6 years ago by 42k • written 6.6 years ago by ▴ 10
5
votes
5
replies
1.5k
views
How to extract out wanted IntegerList more elegantly from nested list?
r s4vectors integerlist iranges
updated 7.6 years ago by ★ 11k • written 7.6 years ago by • 0
5
votes
6
replies
668
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 7 months ago by 16k • written 7 months ago by ★ 1.5k
5
votes
10
replies
2.2k
views
caught segfault error when loading S4Vectors package in R
R S4Vectors segfault
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 20
5
votes
2
replies
929
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.1 years ago by ★ 11k • written 5.1 years ago by 1.6k
4
votes
10
replies
2.2k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 7.3 years ago by 16k • written 7.3 years ago by ▴ 70
4
votes
4
replies
1.2k
views
S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 12 months ago by ▴ 90
4
votes
6
replies
1.5k
views
breakTies for a Hits-object based on value in mcols?
s4vectors hits
updated 6.4 years ago by ★ 11k • written 6.4 years ago by ▴ 180
4
votes
1
reply
1.0k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 2.4 years ago by 16k • written 2.4 years ago by ▴ 180
3
votes
12
replies
2.1k
views
S4Vectors and subectHits error
s4vectors copywriter
updated 6.1 years ago by ★ 11k • written 6.1 years ago by ▴ 200
3
votes
2
replies
1.7k
views
Proper way to read in a DataFrame with CharacterList columns that was saved to a text file
s4vectors genomicranges
updated 7.9 years ago by ★ 11k • written 7.9 years ago by ★ 1.0k
3
votes
12
replies
2.6k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.2 years ago sergi.picart ▴ 20
3
votes
1
reply
1.1k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 8.0 years ago by ▴ 420 • written 8.2 years ago by ▴ 140
3
votes
5
replies
1.7k
views
How can I coerce "list" to S4 "List" (reproducible example is available)?
coercion data manipulation s4vectors List
7.9 years ago Jurat Shahidin ▴ 80
3
votes
8
replies
2.6k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors Matrix
7.3 years ago peter.kharchenko ▴ 30
3
votes
2
replies
2.7k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 3.0 years ago by 65k • written 3.0 years ago by ★ 1.5k
2
votes
2
replies
2.1k
views
Problem when installing DESeq on MAC OS X
s4vectors mac os x deseq
updated 8.2 years ago by ★ 13k • written 8.2 years ago by • 0
2
votes
1
reply
900
views
Adding a column to a class that contains DataFrame
s4vectors
6.4 years ago • updated 6.3 years ago Michael Love 42k
2
votes
3
replies
1.6k
views
Is there an easy way to extend coverage to seqlengths and fill with zeroes?
coverage s4vectors seqlengths
8.3 years ago liz.ingsimmons ▴ 140
2
votes
1
reply
299
views
DataFrame Printing User Control
S4Vectors
updated 5 months ago by 16k • written 5 months ago by ★ 1.5k
2
votes
3
replies
1.5k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 4.8 years ago by ★ 13k • written 4.8 years ago by ▴ 30
2
votes
9
replies
1.8k
views
S4Vectors not loading
S4Vectors
4.2 years ago Panos Balomenos • 0
2
votes
1
reply
894
views
DataFrame or DFrame
S4Vectors
updated 3.0 years ago by 700 • written 3.0 years ago by ★ 1.5k
2
votes
2
replies
2.0k
views
Error in installation of scran
S4Vectors IRanges XVector GenomicRanges scran
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
2
votes
0
replies
725
views
News: BioC2021 organizing committee
BioC2021 S4Vectors
3.5 years ago Levi Waldron ★ 1.1k
2
votes
1
reply
951
views
Question about parallel manipulation on CharacterList objects
s4vectors IRanges
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 450
2
votes
3
replies
937
views
S4Vectors, strange metadata behavior
GRangesList S4Vectors
updated 2.5 years ago by 16k • written 2.5 years ago by ▴ 80
1
vote
7
replies
2.3k
views
What to do when all the installation methods for a package fail (pagoo)?
S4Vectors pagoo
23 months ago MauriAndres • 0
1
vote
11
replies
1.8k
views
Error uploading deseq2
deseq2 S4Vectors
updated 4.1 years ago by 25k • written 4.1 years ago by • 0
1
vote
2
replies
1.4k
views
Error running table() on an RleList returned by coverage()
GenomicRanges S4Vectors
updated 9.6 years ago by 16k • written 9.6 years ago by ★ 5.2k
1
vote
4
replies
1.7k
views
IRanges missing S4Vectors_defines.h
iranges s4vectors
updated 9.1 years ago by 16k • written 9.1 years ago by ▴ 10
1
vote
2
replies
3.3k
views
Error in installation S4Vectors package
s4vectors
updated 8.4 years ago by ★ 8.2k • written 8.5 years ago by • 0
1
vote
1
reply
5.2k
views
Error trying to install GenomicRanges
cummerbund rtracklayer genomicranges s4vectors iranges
updated 8.3 years ago by ★ 6.5k • written 8.3 years ago by • 0
1
vote
1
reply
966
views
Bug report: unpredictable coloumn ranaming in DataFrame class
S4Vectors
updated 7.1 years ago by ★ 11k • written 7.1 years ago by • 0
1
vote
0
replies
1.4k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
6.6 years ago Leonardo Collado Torres ★ 1.0k
1
vote
2
replies
1.7k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
1
vote
3
replies
1.6k
views
Correct way to split and unsplit a DataFrame
s4vectors iranges
updated 4.7 years ago by ★ 11k • written 4.7 years ago by ▴ 90
1
vote
1
reply
807
views
Checking if to DataFrames are identical
S4Vectors DataFrame
4.7 years ago maltethodberg ▴ 180
0
votes
2
replies
598
views
Using dplyr commands with DataFrame objects
S4Vectors
7 months ago GE • 0
0
votes
1
reply
120
views
Version 3.15 S4Vectors packages are missing
S4Vectors
updated 16 days ago by 3.9k • written 17 days ago by • 0
0
votes
1
reply
781
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors methods
4.7 years ago Aditya ▴ 160
0
votes
7
replies
3.3k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.6 years ago james.dalgleish ▴ 30
0
votes
4
replies
1.7k
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges S4Vectors dplyr
updated 5.3 years ago by 65k • written 5.3 years ago by ▴ 140
0
votes
1
reply
1.5k
views
Is S4Vectors not able to install in R-3.5.1?
S4Vectors R-3.5.1
5.4 years ago zhang303 • 0
0
votes
4
replies
1.6k
views
‘parallel_slot_names’ is not exported by 'namespace:S4Vectors'
S4Vectors
updated 3.4 years ago by 16k • written 3.4 years ago by • 0
0
votes
1
reply
3.2k
views
problem in loading Deseq2
deseq2 S4Vectors
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges methylKit S4Vectors
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning by angelaesper43 • 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Popular Question to Chris ▴ 10
Popular Question to Guido Hooiveld ★ 4.0k
Scholar to Michael Love 42k
Locations • All
Greece, 4 minutes ago
Spain, 17 minutes ago
Spain, 20 minutes ago
Sweden, 30 minutes ago
Greece, 34 minutes ago
Traffic: 745 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6