Showing : TOPGO • reset
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176
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library(topGO) query
topGO scRNAseq
updated 8 weeks ago by ▴ 720 • written 8 weeks ago by • 0
1
vote
1
reply
302
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 4 months ago by ▴ 40 • written 4 months ago by • 0
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1
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330
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In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 5 months ago by 63k • written 5 months ago by • 0
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0
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225
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
5 months ago Priya • 0
1
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1
reply
553
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topGo error loading data
topGO GO
9 months ago peter • 0
1
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0
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461
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
12 months ago Kevin Gregory ▴ 10
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4
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1.1k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 14 months ago by ▴ 720 • written 14 months ago by ▴ 10
1
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3
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889
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Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 15 months ago by 63k • written 15 months ago by ▴ 60
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5
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1.3k
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GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 15 months ago by 63k • written 16 months ago by ▴ 10
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0
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396
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What exactly are Nontrivial node in topGO analysis?
topGO GO
17 months ago theophile • 0
0
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6
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998
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extract significant gene list from specific GO namber
topGO
updated 18 months ago by 63k • written 18 months ago by • 0
4
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7
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1.4k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 19 months ago by ▴ 150 • written 19 months ago by • 0
0
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1
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702
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
0
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1
reply
613
views
Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 2.1 years ago by 63k • written 2.1 years ago by • 0
0
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1
reply
592
views
topGo GenTable returns result column as character
GenTable topGO
updated 2.6 years ago by 63k • written 2.6 years ago by • 0
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0
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476
views
topGO weight01 method: potential bug in the code
topGO weight01
2.6 years ago Vladimir • 0
1
vote
3
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1.0k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 2.6 years ago by ▴ 720 • written 2.6 years ago by • 0
2
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0
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677
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
2.6 years ago Ben ▴ 50
1
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1
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1.2k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 2.7 years ago by 63k • written 2.7 years ago by • 0
2
votes
1
reply
1.6k
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topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 2.7 years ago by ▴ 20 • written 10.5 years ago by ▴ 340
1
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3
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1.0k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 2.7 years ago by 63k • written 2.7 years ago by • 0
0
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0
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582
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Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
2.8 years ago Madza Farias-Virgens • 0
0
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7
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1.7k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 2.9 years ago by 48k • written 2.9 years ago by ▴ 20
0
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4
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875
views
topGO "argument is of length zero" error
GO.db topGO
updated 2.9 years ago by 63k • written 2.9 years ago by • 0
1
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6
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1.0k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 3.0 years ago by 63k • written 3.0 years ago by • 0
3
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4
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1.3k
views
Different geneset same p-values in topGO
topgo bug
6.7 years ago • updated 3.0 years ago Lluís Revilla Sancho ▴ 720
4
votes
4
replies
1.0k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 3.0 years ago by 48k • written 3.0 years ago by ▴ 120
2
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3
replies
790
views
Error in topGO analysis
software error topGO go
updated 3.1 years ago by 3.8k • written 3.1 years ago by • 0
0
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3
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700
views
Use topGOdata in devtools package
topGO devtools R
updated 3.1 years ago by 63k • written 3.1 years ago by • 0
1
vote
1
reply
883
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 3.2 years ago by 63k • written 3.2 years ago by ▴ 10
4
votes
8
replies
4.8k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 3.2 years ago by 3.8k • written 3.2 years ago by ▴ 10
4
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8
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1.5k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 7 months ago by 63k • written 3.3 years ago by ▴ 30
5
votes
7
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836
views
Unexpected error with topGO, cannot build topGOdata object
topGO
3.4 years ago abf ▴ 30
0
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1
reply
479
views
Missing ALL library in BiocManager using topGO
topGO
updated 3.4 years ago by 63k • written 3.4 years ago by • 0
1
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3
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1.2k
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TopGO significant genes
TopGO GO
3.4 years ago Al-a ▴ 10
0
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14
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1.7k
views
annFUN error TOPGO
TOPGO annFUN error
updated 3.5 years ago by 3.8k • written 3.5 years ago by • 0
0
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1
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661
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
4.1 years ago s.bourne • 0
3
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3
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862
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.2 years ago by 63k • written 4.2 years ago by • 0
2
votes
2
replies
1.8k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 4.3 years ago by 63k • written 4.3 years ago by ▴ 60
0
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3
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1.0k
views
usage of topGO after limma
limma topGO microarray
updated 4.5 years ago by 48k • written 4.5 years ago by • 0
0
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0
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887
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topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
4.5 years ago psutton • 0
1
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1
reply
880
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
4.7 years ago David ROUX ▴ 20
0
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1
reply
1.2k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
4.8 years ago natske ▴ 10
2
votes
6
replies
1.5k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 4.8 years ago by 63k • written 4.8 years ago by • 0
3
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9
replies
4.2k
views
topGO "invalid argument to unary operator"
software error topgo
updated 4.9 years ago by 63k • written 4.9 years ago by • 0
0
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0
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974
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
5.0 years ago Dave Th. • 0
0
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0
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985
views
topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
5.0 years ago anton.kratz ▴ 60
0
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4
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1.5k
views
How do you specify "chip" in printGenes of TopGO for maize data
TopGo printGenes
updated 5.1 years ago by 63k • written 5.1 years ago by • 0
3
votes
3
replies
816
views
DEXUSResult as.data.frame doesn't work well if topGO is loaded
dexus topgo
updated 5.1 years ago by 63k • written 5.1 years ago by • 0
0
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0
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567
views
TopGOdata Object error
topgo
5.2 years ago s1607338 • 0
50 results • Page 1 of 1
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Comment: DMRcate design by Jitendra ▴ 10
Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…
Comment: DelayedArray::read_sparse_block by Koki ▴ 10
Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …
Comment: DelayedArray::read_sparse_block by Koki ▴ 10
Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…
Votes
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
Answer: What MetaPhlAn3 database was used in cMD 3?
Comment: Speeding up of DelayedArray::write_block()
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