Showing : TopGO • reset
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Error when running topGO with KS statistic and elim agorithm
topGO
updated 2 days ago by 66k • written 3 days ago by • 0
1
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2
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641
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Access genes associated with GO terms for a topGO object created with gene2GO
topGO
4 months ago Dan • 0
0
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2
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647
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enrichPlot error when plotting topGO results
topGO enrichplot
updated 7 months ago by 66k • written 7 months ago by • 0
0
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1
reply
588
views
library(topGO) query
topGO scRNAseq
updated 10 months ago by ▴ 780 • written 10 months ago by • 0
1
vote
1
reply
581
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 13 months ago by ▴ 40 • written 13 months ago by • 0
0
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1
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815
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In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 13 months ago by 66k • written 13 months ago by • 0
0
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0
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472
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
13 months ago Priya • 0
1
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1
reply
1.1k
views
topGo error loading data
topGO GO
17 months ago peter • 0
1
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0
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804
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
20 months ago Kevin Gregory ▴ 10
0
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4
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2.7k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 22 months ago by ▴ 730 • written 22 months ago by ▴ 10
1
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3
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1.7k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 23 months ago by 66k • written 23 months ago by ▴ 60
0
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5
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2.1k
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GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 24 months ago by 66k • written 24 months ago by ▴ 10
0
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0
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603
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What exactly are Nontrivial node in topGO analysis?
topGO GO
2.1 years ago theophile • 0
0
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6
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1.4k
views
extract significant gene list from specific GO namber
topGO
updated 2.2 years ago by 66k • written 2.2 years ago by • 0
4
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7
replies
2.0k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 2.3 years ago by ▴ 150 • written 2.3 years ago by • 0
0
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1
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1.1k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
0
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1
reply
862
views
Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 2.8 years ago by 66k • written 2.8 years ago by • 0
0
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1
reply
862
views
topGo GenTable returns result column as character
GenTable topGO
updated 3.2 years ago by 66k • written 3.2 years ago by • 0
0
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0
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650
views
topGO weight01 method: potential bug in the code
topGO weight01
3.3 years ago Vladimir • 0
1
vote
3
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1.4k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 3.3 years ago by ▴ 730 • written 3.3 years ago by • 0
2
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0
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955
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.3 years ago Ben ▴ 50
1
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1
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1.7k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 3.3 years ago by 66k • written 3.3 years ago by • 0
1
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3
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1.4k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 3.4 years ago by 66k • written 3.4 years ago by • 0
0
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0
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773
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.5 years ago Madza Farias-Virgens • 0
0
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7
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2.4k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 3.5 years ago by 50k • written 3.5 years ago by ▴ 20
0
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4
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1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.6 years ago by 66k • written 3.6 years ago by • 0
1
vote
6
replies
1.5k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 3.7 years ago by 66k • written 3.7 years ago by • 0
4
votes
4
replies
1.3k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 3.7 years ago by 50k • written 3.7 years ago by ▴ 120
2
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3
replies
1.1k
views
Error in topGO analysis
software error topGO go
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
0
votes
3
replies
972
views
Use topGOdata in devtools package
topGO devtools R
updated 3.8 years ago by 66k • written 3.8 years ago by • 0
4
votes
8
replies
5.9k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
1
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1
reply
1.1k
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 3.9 years ago by 66k • written 3.9 years ago by ▴ 10
4
votes
8
replies
2.2k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 15 months ago by 66k • written 4.0 years ago by ▴ 30
0
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1
reply
698
views
Missing ALL library in BiocManager using topGO
topGO
updated 4.1 years ago by 66k • written 4.1 years ago by • 0
5
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7
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1.2k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
4.1 years ago • updated 4.0 years ago abf ▴ 30
1
vote
3
replies
1.5k
views
TopGO significant genes
TopGO GO
4.1 years ago Al-a ▴ 10
0
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14
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2.3k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
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1
reply
895
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
4.8 years ago s.bourne • 0
3
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3
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1.2k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.9 years ago by 66k • written 4.9 years ago by • 0
2
votes
2
replies
2.1k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 5.0 years ago by 66k • written 5.0 years ago by ▴ 60
0
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3
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1.3k
views
usage of topGO after limma
limma topGO microarray
updated 5.2 years ago by 50k • written 5.2 years ago by • 0
0
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0
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1.1k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
5.2 years ago psutton • 0
1
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1
reply
1.1k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
5.3 years ago David ROUX ▴ 20
0
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1
reply
1.6k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
5.5 years ago natske ▴ 10
2
votes
6
replies
1.9k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 5.5 years ago by 66k • written 5.5 years ago by • 0
3
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9
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4.8k
views
topGO "invalid argument to unary operator"
software error topgo
updated 5.5 years ago by 66k • written 5.5 years ago by • 0
0
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0
replies
1.2k
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
5.6 years ago Dave Th. • 0
0
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0
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1.2k
views
topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
5.7 years ago anton.kratz ▴ 60
0
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4
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1.8k
views
How do you specify "chip" in printGenes of TopGO for maize data
TopGo printGenes
updated 5.8 years ago by 66k • written 5.8 years ago by • 0
3
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3
replies
1.1k
views
DEXUSResult as.data.frame doesn't work well if topGO is loaded
dexus topgo
updated 5.8 years ago by 66k • written 5.8 years ago by • 0
50 results • Page 1 of 1
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Replies
Comment: GSVA function by Robert Castelo ★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Comment: Error in render R qmd document (could not find function "process") by ATpoint ★ 4.2k
This is not related to Bioconductor, and even if it was, please understand that without code one cannot debug these questions. The most obv…
Comment: GSVA function by michelafrancesconi8 • 0
When I log trasform my matrix after the DESeq2 normalization, I have some negative value, should I add a 1 to all my matrix? Thank you Mi…
Comment: Normalisation using clinical traits in RNA seq using DESeq2 by sukeshinik5 • 0
Thank you, so much for the response. When we estimate factors of unwanted variable, which is the better options for factorisation of the va…
Votes
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
C: DiffBind Batch Effect
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