Showing : TopGo • reset
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54
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Error when running topGO with KS statistic and elim agorithm
topGO
updated 2 days ago by 66k • written 2 days ago by • 0
1
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2
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640
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Access genes associated with GO terms for a topGO object created with gene2GO
topGO
4 months ago Dan • 0
0
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2
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642
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 7 months ago by 66k • written 7 months ago by • 0
0
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1
reply
588
views
library(topGO) query
topGO scRNAseq
updated 10 months ago by ▴ 780 • written 10 months ago by • 0
1
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1
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581
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 13 months ago by ▴ 40 • written 13 months ago by • 0
0
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1
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812
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In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 13 months ago by 66k • written 13 months ago by • 0
0
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0
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472
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
13 months ago Priya • 0
1
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1
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1.1k
views
topGo error loading data
topGO GO
17 months ago peter • 0
1
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0
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804
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
20 months ago Kevin Gregory ▴ 10
0
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4
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2.7k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 22 months ago by ▴ 730 • written 22 months ago by ▴ 10
1
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3
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1.7k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 23 months ago by 66k • written 23 months ago by ▴ 60
0
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5
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2.1k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 24 months ago by 66k • written 24 months ago by ▴ 10
0
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0
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602
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What exactly are Nontrivial node in topGO analysis?
topGO GO
2.1 years ago theophile • 0
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6
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1.4k
views
extract significant gene list from specific GO namber
topGO
updated 2.2 years ago by 66k • written 2.2 years ago by • 0
4
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7
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2.0k
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Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 2.3 years ago by ▴ 150 • written 2.3 years ago by • 0
0
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1
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1.1k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
0
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1
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861
views
Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 2.8 years ago by 66k • written 2.8 years ago by • 0
0
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1
reply
862
views
topGo GenTable returns result column as character
GenTable topGO
updated 3.2 years ago by 66k • written 3.2 years ago by • 0
0
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0
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650
views
topGO weight01 method: potential bug in the code
topGO weight01
3.3 years ago Vladimir • 0
1
vote
3
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1.4k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 3.3 years ago by ▴ 730 • written 3.3 years ago by • 0
2
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0
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955
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Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.3 years ago Ben ▴ 50
1
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1
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1.7k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 3.3 years ago by 66k • written 3.3 years ago by • 0
2
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1
reply
1.9k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.4 years ago by ▴ 20 • written 11.2 years ago by ▴ 340
1
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3
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1.4k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 3.4 years ago by 66k • written 3.4 years ago by • 0
0
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0
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773
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.5 years ago Madza Farias-Virgens • 0
0
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7
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2.4k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 3.5 years ago by 50k • written 3.5 years ago by ▴ 20
0
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4
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1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.6 years ago by 66k • written 3.6 years ago by • 0
1
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6
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1.5k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 3.7 years ago by 66k • written 3.7 years ago by • 0
3
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4
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1.6k
views
Different geneset same p-values in topGO
topgo bug
7.4 years ago • updated 3.7 years ago Lluís Revilla Sancho ▴ 730
4
votes
4
replies
1.3k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 3.7 years ago by 50k • written 3.7 years ago by ▴ 120
2
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3
replies
1.1k
views
Error in topGO analysis
software error topGO go
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
0
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3
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970
views
Use topGOdata in devtools package
topGO devtools R
updated 3.8 years ago by 66k • written 3.8 years ago by • 0
1
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1
reply
1.1k
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 3.8 years ago by 66k • written 3.9 years ago by ▴ 10
4
votes
8
replies
5.9k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
4
votes
8
replies
2.2k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 15 months ago by 66k • written 4.0 years ago by ▴ 30
5
votes
7
replies
1.2k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
4.1 years ago • updated 4.0 years ago abf ▴ 30
0
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1
reply
697
views
Missing ALL library in BiocManager using topGO
topGO
updated 4.1 years ago by 66k • written 4.1 years ago by • 0
1
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3
replies
1.5k
views
TopGO significant genes
TopGO GO
4.1 years ago Al-a ▴ 10
0
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14
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2.3k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
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1
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894
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
4.8 years ago s.bourne • 0
3
votes
3
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1.2k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.9 years ago by 66k • written 4.9 years ago by • 0
2
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2
replies
2.1k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 5.0 years ago by 66k • written 5.0 years ago by ▴ 60
0
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3
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1.3k
views
usage of topGO after limma
limma topGO microarray
updated 5.2 years ago by 50k • written 5.2 years ago by • 0
0
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0
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1.1k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
5.2 years ago psutton • 0
1
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1
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1.1k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
5.3 years ago David ROUX ▴ 20
0
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1
reply
1.6k
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topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
5.5 years ago natske ▴ 10
2
votes
6
replies
1.9k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 5.5 years ago by 66k • written 5.5 years ago by • 0
3
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9
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4.7k
views
topGO "invalid argument to unary operator"
software error topgo
updated 5.5 years ago by 66k • written 5.5 years ago by • 0
0
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0
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1.2k
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
5.6 years ago Dave Th. • 0
0
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0
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1.2k
views
topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
5.7 years ago anton.kratz ▴ 60
50 results • Page 1 of 1
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Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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