Showing : biocgenerics • reset
3
votes
3
replies
754
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
8 months ago jacques.imbert • 0
2
votes
4
replies
899
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
19 months ago Michael Steinbaugh ▴ 90
1
vote
1
reply
764
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics ddCt
updated 21 months ago by ▴ 10 • written 23 months ago by ▴ 10
1
vote
7
replies
2.2k
views
DESeqDataSetFromMatrix error
BiocGenerics DESeq2 DEGreport RNASeqData DEG
updated 2.5 years ago by 67k • written 2.5 years ago by • 0
2
votes
2
replies
3.5k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
0
votes
2
replies
5.8k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
2
votes
2
replies
2.3k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.5 years ago GENOMIC_region • 0
2
votes
1
reply
1.2k
views
Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 6.8 years ago by 67k • written 6.9 years ago by • 0
1
vote
6
replies
1.9k
views
Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
6.9 years ago rea ▴ 10
1
vote
4
replies
2.8k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 7.0 years ago by 25k • written 7.0 years ago by • 0
0
votes
4
replies
2.5k
views
Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
7.1 years ago siinemselvi • 0
7
votes
4
replies
2.4k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 7.2 years ago by 16k • written 7.3 years ago by ▴ 40
6
votes
6
replies
1.8k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 7.3 years ago by 16k • written 7.3 years ago by ▴ 20
0
votes
1
reply
1.2k
views
BiocGenerics paste strange behavior (bug?)
biocgenerics
7.4 years ago Peter Langfelder ★ 3.0k
0
votes
2
replies
1.7k
views
replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 8.2 years ago by 25k • written 8.2 years ago by • 0
2
votes
3
replies
1.5k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
9.2 years ago • updated 14 months ago Konstantinos Yeles ▴ 80
0
votes
4
replies
2.5k
views
Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 10.3 years ago by 67k • written 10.3 years ago by ▴ 430
0
votes
0
replies
1.3k
views
答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
10.7 years ago Dan Tenenbaum ★ 8.2k
0
votes
2
replies
3.6k
views
Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 10.9 years ago by ★ 8.2k • written 10.9 years ago by ★ 13k
0
votes
2
replies
2.9k
views
Trouble installing BiocGenerics
BiocGenerics BiocGenerics
11.0 years ago Andreas Leha ▴ 30
0
votes
0
replies
1.9k
views
BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
11.2 years ago Wolfgang Huber ★ 13k
0
votes
2
replies
2.8k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.8 years ago by 25k • written 11.8 years ago by ▴ 40
0
votes
14
replies
3.2k
views
BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 11.8 years ago by ★ 8.2k • written 11.8 years ago by ▴ 200
0
votes
2
replies
1.8k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.9 years ago by 25k • written 11.9 years ago by ▴ 80
0
votes
8
replies
2.2k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 12.1 years ago by ★ 11k • written 12.1 years ago by 16k
0
votes
1
reply
1.1k
views
Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 12.2 years ago by ★ 8.2k • written 12.2 years ago by ▴ 10
26 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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