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biocinstaller
•
reset
1
vote
14
replies
11k
views
Unable to connect from R 3.2.2
biocinstaller
source
8.5 years ago
michel.renou
• 0
0
votes
12
replies
2.1k
views
MacOS Package installation problems
BiocInstaller
BiocInstaller
updated 11.9 years ago by
Chinedu Orekie
▴ 10 • written 11.9 years ago by
Michael Salbaum
▴ 80
0
votes
6
replies
2.2k
views
error installing Rgraphviz
Rgraphviz
PROcess
BiocInstaller
Rgraphviz
PROcess
BiocInstaller
updated 11.9 years ago by
Dan Tenenbaum
★ 8.2k • written 11.9 years ago by
Mark Miller
▴ 10
1
vote
5
replies
2.7k
views
bioclite lib.loc and R_LIBS_USER
biocinstaller
8.8 years ago
Janet Young
▴ 740
0
votes
6
replies
1.7k
views
Illumina Methylation Manifest Install
Install
biocinstaller
package installation
6.0 years ago
julieumn
• 0
1
vote
5
replies
1.6k
views
Making package compatible with old version of R/Bioconductor
bioconductor
R
software error
biocinstaller
7.9 years ago
gabriel.hoffman
▴ 110
2
votes
9
replies
1.8k
views
broken download for source tarball of BiocInstaller 1.16.3
download
biocinstaller
8.9 years ago
kenneth.hoste
▴ 20
1
vote
11
replies
4.7k
views
Error when install ggbio
ggbio
biocinstaller
updated 8.3 years ago by
Livia Rasp
• 0 • written 8.4 years ago by
syrttgump
▴ 20
0
votes
5
replies
9.3k
views
Cannot install clusterProfiler
clusterprofiler
biocinstaller
updated 2.4 years ago by
thkapell
▴ 10 • written 6.0 years ago by
dtatarak
• 0
0
votes
6
replies
2.2k
views
[Bioc-devel] XML package downloading problem with bioconductor.org
Cancer
BiocInstaller
Cancer
BiocInstaller
updated 12.6 years ago by
Liu,Bin
▴ 50 • written 12.6 years ago by
Vincent J. Carey, Jr.
6.7k
0
votes
2
replies
6.0k
views
impute package
impute
BiocInstaller
impute
BiocInstaller
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
Wendy Yim
▴ 10
0
votes
2
replies
2.3k
views
unable to install lumi package
lumi
BiocInstaller
lumi
BiocInstaller
updated 12.5 years ago by
James W. MacDonald
65k • written 12.5 years ago by
Juliet Hannah
▴ 360
0
votes
2
replies
1.0k
views
Error installing iFlow
iFlow
BiocInstaller
iFlow
BiocInstaller
updated 11.3 years ago by
James W. MacDonald
65k • written 11.3 years ago by
Jacques Fattaccioli [ENS]
▴ 10
0
votes
2
replies
3.6k
views
Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
BiocInstaller
BiocInstaller
updated 11.8 years ago by
Dan Tenenbaum
★ 8.2k • written 11.8 years ago by
Peng Yu
▴ 940
1
vote
10
replies
5.0k
views
Rsubread package not available? Warning resolved
affxparser
Rsubread
BiocInstaller
affxparser
Rsubread
BiocInstaller
updated 12.4 years ago by
Wei Shi
★ 3.6k • written 12.4 years ago by
NDowell
▴ 20
2
votes
2
replies
1.4k
views
BiomaRT URLs down? 404 Not Found
biomart
bioconductor
support.bioconductor.org
biocinstaller
install
6.3 years ago
n.pantelireis16
• 0
3
votes
11
replies
6.3k
views
Problems getting Bioc 3.1 after upgrade to R_3.2.0
biocinstaller
r update
9.0 years ago
meeta.mistry
▴ 30
0
votes
4
replies
1.9k
views
package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel
Annotation
cdf
BiocInstaller
Annotation
cdf
BiocInstaller
updated 11.7 years ago by
Benilton Carvalho
★ 4.3k • written 11.7 years ago by
suparna mitra
▴ 290
1
vote
2
replies
1.7k
views
Rsubread package not available?
Rsubread
BiocInstaller
updated 4.7 years ago by
Gordon Smyth
50k • written 12.4 years ago by
Noah Dowell
▴ 410
0
votes
3
replies
1.1k
views
Troubles with mzR and BiocInstaller
mzr rcpp
biocinstaller
5.4 years ago • updated 5.3 years ago
petr.hasler
• 0
0
votes
2
replies
1.1k
views
can't downlaod package "beadarrayExampleData"
BiocInstaller
BiocInstaller
updated 12.4 years ago by
Dan Tenenbaum
★ 8.2k • written 12.4 years ago by
易士 路
▴ 10
0
votes
4
replies
1.8k
views
Problem in installing Rgraphviz
Rgraphviz
BiocInstaller
Rgraphviz
BiocInstaller
updated 10.9 years ago by
Steve Lianoglou
★ 13k • written 10.9 years ago by
Guest User
★ 13k
0
votes
2
replies
1.6k
views
Package installation errors for Bioconductor and easyRNASeq
installation
biocinstaller
easyrnaseq
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
michael.dhar
• 0
2
votes
2
replies
1.9k
views
BioC and genevisR and maftools
genevisr
maftools
bioconductor
biocinstaller
7.3 years ago
Bogdan
▴ 670
0
votes
20
replies
12k
views
BiocInstaller’ is not available (for R version 3.2.2)
biocinstaller
8.7 years ago
anikumar.murugan
• 0
6
votes
2
replies
1.8k
views
BiocUpgrade without being promped to confirm
bioclite
biocinstaller
biocupgrade
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Simon Coetzee
▴ 50
3
votes
7
replies
2.5k
views
Workflows in BioC 3.2
workflows
installation
biocinstaller
updated 8.3 years ago by
angela.oliveira.pisco
• 0 • written 8.5 years ago by
davide risso
▴ 950
2
votes
7
replies
3.3k
views
Bioconductor installing pakage error, R 3.4.2, Ubuntu 17.10
bioconductor
biocinstaller
package installation
6.5 years ago
martyferr90
▴ 20
0
votes
1
reply
1.2k
views
goseq installation - BiasedUrn is not available
BiocInstaller
BiocInstaller
updated 11.8 years ago by
Dan Tenenbaum
★ 8.2k • written 11.8 years ago by
steve Shen
▴ 70
0
votes
3
replies
2.2k
views
Rsubread installation failed.
Rsubread
BiocInstaller
updated 12.3 years ago by
Gordon Smyth
50k • written 12.3 years ago by
Sang Chul Choi
▴ 230
3
votes
3
replies
3.8k
views
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller
installation
TxDb
updated 9.3 years ago by
Marc Carlson
★ 7.2k • written 9.3 years ago by
Laurent Gatto
1.6k
0
votes
4
replies
2.4k
views
tcltk package for R 2.14.1
affylmGUI
BiocInstaller
affylmGUI
BiocInstaller
updated 12.3 years ago by
Dan Tenenbaum
★ 8.2k • written 12.3 years ago by
Chintan Vora - Xcelris
▴ 70
1
vote
1
reply
1.2k
views
Installing DESeq2 error: missing value where TRUE/FALSE needed
deseq2
error
biocinstaller
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
dfhannum
▴ 10
2
votes
2
replies
4.5k
views
Help with installing biocLite.R
biocLite
biocinstaller
9.0 years ago
thomas.mohr
▴ 20
0
votes
3
replies
1.3k
views
useDevel() not working
BiocInstaller
BiocInstaller
updated 11.9 years ago by
Sean Davis
21k • written 11.9 years ago by
Michael Muratet
▴ 420
0
votes
4
replies
2.7k
views
GEOquery loading error
hgu133plus2
GEOquery
BiocInstaller
hgu133plus2
GEOquery
BiocInstaller
updated 12.0 years ago by
Dan Tenenbaum
★ 8.2k • written 12.0 years ago by
Guest User
★ 13k
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Shields, Rusty IMS
▴ 40
0
votes
9
replies
2.5k
views
ggbio: error when updating to current release version
BiocInstaller
ggbio
BiocInstaller
ggbio
updated 12.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.1 years ago by
Juan L. Mateo
▴ 80
0
votes
1
reply
995
views
help
cdf
xcms
BiocInstaller
cdf
xcms
BiocInstaller
updated 12.4 years ago by
Steve Lianoglou
★ 13k • written 12.4 years ago by
Guest User
★ 13k
3
votes
2
replies
3.2k
views
Cannot install GenomicFeatures package (related to RSQLite version)
biocinstaller
genomicfeatures
rsqlite
updated 9.4 years ago by
Dan Tenenbaum
★ 8.2k • written 9.4 years ago by
vimartin
• 0
1
vote
1
reply
6.1k
views
edgeR usage
edgeR
BiocInstaller
edgeR
BiocInstaller
updated 12.1 years ago by
James W. MacDonald
65k • written 12.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
cummeRbund
BiocInstaller
cummeRbund
Gviz
BiocInstaller
cummeRbund
Gviz
updated 11.2 years ago by
Dan Du
▴ 210 • written 11.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
[devteam-bioc] Rsamtools installation error
Rsamtools
BiocInstaller
Rsamtools
BiocInstaller
updated 11.2 years ago by
tkhodges
▴ 20 • written 11.2 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
1.2k
views
Is the qrqc package source updated?
qrqc
BiocInstaller
qrqc
BiocInstaller
updated 12.1 years ago by
Dan Tenenbaum
★ 8.2k • written 12.1 years ago by
NDowell
▴ 20
0
votes
1
reply
1.4k
views
geneLenDataBase installation issues
GO
rtracklayer
goseq
BiocInstaller
GO
rtracklayer
goseq
BiocInstaller
updated 12.1 years ago by
Martin Morgan
25k • written 12.1 years ago by
Matthew Young
▴ 50
0
votes
2
replies
1.5k
views
installing Rdisop
Rdisop
BiocInstaller
Rdisop
BiocInstaller
updated 11.1 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
Guest User
★ 13k
0
votes
7
replies
1.7k
views
Install error affxparser for R 2.15
PROcess
affxparser
BiocInstaller
PROcess
affxparser
BiocInstaller
updated 12.1 years ago by
Dan Tenenbaum
★ 8.2k • written 12.1 years ago by
David Ruau
▴ 60
0
votes
2
replies
2.1k
views
Help - Rgraphviz install error for R 2.15 on Ubuntu 11.10
BiocInstaller
BiocInstaller
updated 12.1 years ago by
Dan Tenenbaum
★ 8.2k • written 12.1 years ago by
xyang2
▴ 120
0
votes
3
replies
2.2k
views
bioc package installation problem
ShortRead
BiocInstaller
ShortRead
BiocInstaller
updated 11.1 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
carol white
▴ 680
0
votes
1
reply
1.0k
views
RGalaxy not working with R 2.14.1?
BiocInstaller
RGalaxy
BiocInstaller
RGalaxy
updated 11.5 years ago by
Dan Tenenbaum
★ 8.2k • written 11.5 years ago by
Samuel Lampa
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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