Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
docker
•
reset
4
votes
2
replies
5.6k
views
how can I install packages in docker/R/bioconductor so that they persist?
docker
8.5 years ago
anton.kratz
▴ 60
1
vote
7
replies
5.1k
views
Installing Bioconductor packages in Docker
Bioconductor
DOCKER
RShiny
updated 21 months ago by
Sam
▴ 10 • written 3.4 years ago by
adklts
• 0
7
votes
0
replies
3.7k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.2 years ago
Vincent J. Carey, Jr.
6.7k
3
votes
3
replies
3.0k
views
best way to terminate a Docker-based bioconductor/RStudio session?
docker
updated 8.7 years ago by
Dan Tenenbaum
★ 8.2k • written 8.7 years ago by
anton.kratz
▴ 60
5
votes
4
replies
2.8k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.5 years ago
RobKo
▴ 10
1
vote
10
replies
2.8k
views
Building mzR package under docker fails
mzR
docker
debian
centos
rocker
8.6 years ago
mjmg
• 0
1
vote
4
replies
2.5k
views
Bioconductor docker images without Rstudio-server?
docker
updated 7.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.4 years ago by
Thomas Sandmann
▴ 90
5
votes
2
replies
2.4k
views
how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
docker
ubuntu
updated 8.7 years ago by
Dan Tenenbaum
★ 8.2k • written 8.7 years ago by
anton.kratz
▴ 60
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker
BiocManager
BiocVersion
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
Michael Steinbaugh
▴ 90
3
votes
9
replies
2.3k
views
Bioconductor docker tags and release versions
docker
release
9.0 years ago • updated 8.6 years ago
Karl Forner
▴ 70
3
votes
6
replies
2.1k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
Nathan Sheffield
▴ 10
0
votes
10
replies
2.0k
views
Ability to use a particular package via Docker
Docker
flowcore
dockerfile
7.7 years ago
jordan.xanthopoulos
• 0
1
vote
1
reply
2.0k
views
Job:
junior level position in proteomics/data science
proteomics
machine learning
git
docker
Job
updated 6.4 years ago by
karimse07
• 0 • written 6.6 years ago by
petyuk
▴ 70
7
votes
0
replies
2.0k
views
News:
Announcing Docker containers for Bioconductor
docker
News
9.4 years ago
Dan Tenenbaum
★ 8.2k
1
vote
4
replies
1.9k
views
how to install Rsamtools in bioconductor/devel_base docker
docker
Rsamtools
8.8 years ago
Ou, Jianhong
★ 1.3k
0
votes
5
replies
1.9k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
20 months ago
Sam
▴ 10
3
votes
7
replies
1.9k
views
Installing densvis on a Singularity container
densvis
docker
updated 12 months ago by
alan.ocallaghan
▴ 160 • written 13 months ago by
James W. MacDonald
66k
0
votes
1
reply
1.9k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 3.4 years ago by
Martin Morgan
25k • written 3.4 years ago by
Khai-Chuong
• 0
2
votes
4
replies
1.8k
views
no date tag included in docker ps output
docker
reproducibility
8.7 years ago
anton.kratz
▴ 60
2
votes
3
replies
1.6k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
17 months ago
jtaylor-predicine
• 0
0
votes
1
reply
1.5k
views
apt-get problems with latest bioconductor/release_core docker
docker
7.5 years ago • updated 7.4 years ago
Karl Forner
▴ 70
1
vote
3
replies
1.5k
views
confused about bioconductor/release_microarray:3.2 tag
docker
microarray
8.5 years ago
Karl Forner
▴ 70
0
votes
1
reply
1.4k
views
bioconductor/release_core:20160630 - BiocInstaller version 3.2 is too old for R version 3.3.1
docker
bioconductor
7.9 years ago
Karl Forner
▴ 70
0
votes
1
reply
1.4k
views
Error installing flowDensity on latest docker container
R
package installation
docker
updated 6.5 years ago by
shepherl
3.9k • written 6.5 years ago by
bbrink
• 0
0
votes
0
replies
1.3k
views
News:
Dockers have been updated for Bioc3.6 and Bioc3.7
docker
bioconductor
release
devel
News
6.6 years ago
shepherl
3.9k
3
votes
0
replies
1.3k
views
News:
Updates to Bioconductor Dockers
docker
bioconductor
News
7.3 years ago
shepherl
3.9k
0
votes
0
replies
1.2k
views
AnnotationData Packages version and pipeline management
docker
annotation
pipeline
8.0 years ago
Elena Grassi
▴ 10
0
votes
2
replies
1.1k
views
does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a fixed snapshot?
mran
docker
cran
updated 2.3 years ago by
James W. MacDonald
66k • written 2.3 years ago by
mk
▴ 20
0
votes
1
reply
1.1k
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
4.2 years ago
shepherl
3.9k
3
votes
1
reply
1.1k
views
Docker container with bioconductor and devtools
docker
updated 4.6 years ago by
shepherl
3.9k • written 4.6 years ago by
raven
• 0
2
votes
2
replies
1.0k
views
docker image with VariantAnnotation package?
docker
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
Paul Shannon
▴ 470
2
votes
0
replies
1.0k
views
News:
Bioconductor Dockers Updated
bioconductor
docker
News
7.1 years ago
shepherl
3.9k
0
votes
0
replies
873
views
Job:
Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines
NGS
Research associate
Docker
Job
4.8 years ago
Daniel Brewer
▴ 100
0
votes
2
replies
568
views
Docker usage with Trio Bioconductor Package
VariantAnnotation
docker
trio
updated 12 months ago by
ATpoint
★ 4.2k • written 12 months ago by
sethberke
• 0
34 results • Page
1 of 1
Recent ...
Replies
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
jovel_juan
▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
SAF files must not have a header.
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
xuz
• 0
Could you try the latest version (1.40.1) to see how it works, I am not able to replicate the error message on my computer here.
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
merv
▴ 120
Thanks! I can confirm it is working now - had been broken since sometime yesterday.
Comment: Errors in chromosome annotation-biomaRt
by
landenshanie
▴ 40
Thank you, I ran your exact code and it correct for Xist, however Ddx3y is still wrongly annotated to chr13 and, like your results, Dusp1 i…
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
Error when converting Seurat to SingleCellExperiment
Comment: unable to access bioconductor packages - qvalue installation failed...
Awards
• All
Popular Question
to
jovel_juan
▴ 30
Scholar
to
ATpoint
★ 4.2k
Popular Question
to
boczniak767
▴ 720
Popular Question
to
mgdrnl
• 0
Popular Question
to
Lorena Pantano
▴ 140
Locations
• All
India,
4 minutes ago
Japan,
11 minutes ago
United States,
11 minutes ago
United States,
19 minutes ago
United States,
19 minutes ago
Traffic: 622 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6