Showing : expressionset • reset
8
votes
23
replies
3.1k
views
Convert Seurat Object to Summarised Experiment or ExpressionSet
SummarizedExperiment ExpressionSet
updated 8 months ago by ★ 3.4k • written 8 months ago by ▴ 50
1
vote
2
replies
438
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
9 months ago Mj.A. • 0
0
votes
3
replies
2.7k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
3
votes
9
replies
1.8k
views
How many features an ExpressionSet can contain ?
ExpressionSet
2.5 years ago OE • 0
0
votes
1
reply
879
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 4.0 years ago by 67k • written 4.0 years ago by • 0
5
votes
2
replies
1.1k
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 4.3 years ago by 25k • written 4.3 years ago by ▴ 20
4
votes
8
replies
2.8k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 4.6 years ago by 52k • written 4.6 years ago by • 0
0
votes
1
reply
666
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
4.7 years ago aush ▴ 40
3
votes
2
replies
2.7k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo GEOquery ExpressionSet
updated 5.2 years ago by 67k • written 5.2 years ago by ▴ 20
0
votes
2
replies
1.2k
views
'GO_analyse' function error
goexpress ExpressionSet GO_analyse
5.3 years ago rezashiralmohammad • 0
0
votes
0
replies
829
views
Computing se.exprs in R for an Expressionset?
microarray Expressionset se.exprs
6.3 years ago payam_delfani1980 • 0
5
votes
7
replies
1.8k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 20
0
votes
0
replies
1.0k
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
6.4 years ago jirkanov • 0
0
votes
0
replies
1.2k
views
Error in building expression set for ArrayExpress
microarray expressionset arrayexpress bioconductor r
6.8 years ago rf • 0
1
vote
10
replies
2.1k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
4
votes
3
replies
1.3k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 7.4 years ago by 67k • written 7.4 years ago by • 0
0
votes
6
replies
1.7k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.6 years ago by • 0 • written 7.9 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 7.6 years ago by 67k • written 7.6 years ago by ▴ 60
0
votes
1
reply
1.4k
views
single probe represent multiple genes?
gcrma microarray expressionset
updated 7.9 years ago by ▴ 840 • written 7.9 years ago by ▴ 20
0
votes
1
reply
1.5k
views
InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
7.9 years ago andreas.pittroff • 0
3
votes
3
replies
2.0k
views
Error running CellMix SampleAnalysis vignette
software error cellmix vignette expressionset
7.9 years ago gabor.halasz • 0
0
votes
1
reply
1.1k
views
beadarray error conversion
beadarray limma ExpressionSet
updated 8.0 years ago by 52k • written 8.0 years ago by • 0
1
vote
2
replies
3.4k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 8.1 years ago by 25k • written 8.1 years ago by ★ 4.1k
1
vote
3
replies
2.4k
views
Log-Transform Values of eSet
expressionset bioconductor limma geoquery
updated 8.2 years ago by ▴ 840 • written 8.2 years ago by • 0
3
votes
5
replies
1.8k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset bioconductor
updated 8.2 years ago by ▴ 70 • written 8.2 years ago by • 0
0
votes
0
replies
1.5k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
8.4 years ago Steffen Neumann ▴ 30
1
vote
1
reply
1.2k
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 70
0
votes
1
reply
1.1k
views
ExpressionSet: Internal Standard
expressionset
updated 8.5 years ago by ★ 13k • written 8.5 years ago by • 0
0
votes
3
replies
2.8k
views
Annotation in ExpressionSet object
ExpressionSet globaltest
8.6 years ago NS ▴ 60
1
vote
1
reply
1.2k
views
Combining more than 2 ExpressionSets at the same time,
expressionset combine concatenate combineTwoExpressionSet
8.7 years ago g_draculla ▴ 10
1
vote
2
replies
1.7k
views
How can I see that my samples is normalized or not?
Normalization ExpressionSet Series
updated 8.8 years ago by 67k • written 8.8 years ago by • 0
2
votes
4
replies
2.1k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 8.9 years ago by 25k • written 8.9 years ago by ▴ 840
2
votes
5
replies
4.9k
views
GSVA error - incomplete instalation?
GSVA ExpressionSet
9.1 years ago thrabe • 0
6
votes
7
replies
4.1k
views
GOexpress: use DESeq2 data object as input
GOexpress deseq2 expressionset
9.2 years ago martin.hoelzer ▴ 20
2
votes
1
reply
3.4k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 9.3 years ago by ★ 28k • written 9.3 years ago by ▴ 30
3
votes
10
replies
2.6k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
9.8 years ago svlachavas ▴ 840
36 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
The city by the bay, 9 minutes ago
Spain, 13 minutes ago
EMBL Heidelberg, 1 hour ago
United States, 2 hours ago
France, 3 hours ago
Traffic: 480 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6