Showing : geo • reset
1
vote
10
replies
473
views
Obtaining pheno data from CEL files
GEO affy
6 weeks ago • updated 5 weeks ago Kurtis • 0
0
votes
1
reply
546
views
how to solve this error
DESeq2 GEO miRNAData
updated 11 months ago by ★ 4.1k • written 11 months ago by • 0
1
vote
5
replies
1.1k
views
Can't read in CEL files
GEO GEOquery
23 months ago OE • 0
5
votes
7
replies
2.2k
views
GEO series matrix empty
GEOquery GEO
2.2 years ago gs.123 ▴ 20
1
vote
2
replies
2.4k
views
GEO RNASeq data query
GEOquery RNASeq GEO
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 10
6
votes
7
replies
2.2k
views
GEOquery reading error on Windows.
GEOquery GEO Gene
updated 2.5 years ago by 65k • written 2.5 years ago by ▴ 50
1
vote
3
replies
1.2k
views
Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
6
votes
5
replies
1.3k
views
a problem of package ""
GEO GEOquery
updated 3.0 years ago by 16k • written 3.0 years ago by ▴ 20
2
votes
3
replies
1.0k
views
Problem about Geoquery
GEO GEOquery
3.0 years ago sheldon19931016 ▴ 20
4
votes
2
replies
1.3k
views
TargetsFile. Where it is?
Limma ArrayExpress GEO
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
3
votes
4
replies
1.4k
views
GEO + RNA-seq. Total Newbie.
RNASeqData RNASeq GEO RNASeqR HELP
3.1 years ago hgalmoore • 0
2
votes
1
reply
2.8k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘rma’ for signature ‘"ExpressionSet"’
GEO oligo
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
5
votes
5
replies
2.5k
views
analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
GEO RNASeqR Transcriptomics
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
0
votes
0
replies
730
views
Identify significantly different DNA methylation probes in tumor and normal samples GBM ELMER R package
ELMER TCGA GEO
3.7 years ago andrade4beatriz • 0
2
votes
2
replies
1.6k
views
How to Analyse Datasets from GEO
geo rnaseq deseq2 tpm
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by ▴ 10
1
vote
1
reply
1.1k
views
Table expression data from GEO file
GEO expression GEOquery
updated 4.1 years ago by ★ 3.3k • written 4.1 years ago by • 0
0
votes
1
reply
1.2k
views
get Gene ID from GEO microarray dataset with fData
GEO
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
1
vote
4
replies
1.2k
views
How to obtain the two gene expression datasets from a dual channel GEO dataset?
dual-channel GEO gene-expression
updated 4.3 years ago by 50k • written 4.3 years ago by • 0
4
votes
5
replies
1.4k
views
All genes display positive fold change in topTable results after limma
limma microarray foldchange DEG GEO
updated 4.3 years ago by 50k • written 4.3 years ago by ▴ 40
0
votes
2
replies
886
views
Annotation Using GEOquery
Annotation GEO TXT
updated 4.5 years ago by 21k • written 4.5 years ago by • 0
0
votes
6
replies
1.3k
views
Opening Illumina HT12 V3.0 Data from GEO
limma normalization GEO
4.6 years ago FL512 • 0
3
votes
2
replies
1.1k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by ▴ 10
0
votes
0
replies
961
views
GEOquery: series matrix not parsing correctly
GEOquery GEO
updated 5.0 years ago by 65k • written 5.0 years ago by ▴ 10
3
votes
6
replies
2.9k
views
GEOquery: HTTP error 403
GEOquery GEO HTTP error 403
5.1 years ago andy_shaps ▴ 10
5
votes
12
replies
2.6k
views
Using eset while parsing GSE file located in a path
GEO geoquery
updated 5.7 years ago by 21k • written 5.7 years ago by ▴ 20
1
vote
3
replies
941
views
Filtering the expression values of a gene from GEO
GEO microarray
updated 5.8 years ago by 65k • written 5.8 years ago by ▴ 20
2
votes
6
replies
1.5k
views
error reading GSE using getGEO()
r geo getgeo
5.8 years ago jaleh.amo • 0
3
votes
2
replies
1.4k
views
Unable to connect to 'watson.nci.nih.gov' on port 80 using GEOmetadb R library
geometadb GEO R bioconductor
updated 5.9 years ago by 21k • written 5.9 years ago by ▴ 20
1
vote
2
replies
1.7k
views
Targets.txt file missing in agilent GEO data. How do I preprocess raw Agilent file of GEO data or how to makethe expression matrix step by step from …
limma microarray agilent microarrays GEO
updated 5.9 years ago by 65k • written 5.9 years ago by • 0
0
votes
4
replies
1.5k
views
GEOquery using keywords in R
GEO geoquery geometadb
updated 6.0 years ago by 21k • written 6.0 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Preprocessing and Normalisation of GEO Meth/Unmeth signals
GEO minfi
6.0 years ago daniel.green • 0
1
vote
1
reply
1.3k
views
GEOquery: Diagnosing SOFT file error
geoquery geo data geo soft files
updated 6.2 years ago by 21k • written 6.2 years ago by ▴ 10
3
votes
11
replies
4.0k
views
GEOquery http:// url error
geoquery error getgeo microarray geo
updated 6.3 years ago by 21k • written 7.1 years ago by • 0
3
votes
5
replies
5.0k
views
Tutorial: Patch for GEOquery package error: getGEO Error in download.file, cannot open destfile
R GEO geoquery geoquery error message Tutorial
6.3 years ago martinguerrerog89 ▴ 20
10
votes
7
replies
2.5k
views
SummarizedExperiment object from GEOquery obtained GSE
geoquery summarizedexperiment GEO matrix
updated 6.4 years ago by 21k • written 6.4 years ago by ▴ 60
1
vote
3
replies
2.4k
views
Reading Illumina HT12 V4.0 Data from GEO into Lumi
lumi geoquery geo illumina human ht-12 v4 gene expression
updated 6.6 years ago by 50k • written 6.6 years ago by • 0
0
votes
1
reply
1.4k
views
GEOquery download error
geoquery error message GEOquery GSE GEO
6.7 years ago Barah ▴ 20
1
vote
3
replies
1.4k
views
Getting gene annotation for a GEO dataset
geo
6.9 years ago • updated 6.8 years ago yuvallb • 0
2
votes
2
replies
2.1k
views
GEOquery error in downloading SOFT files
geoquery getgeo GEO
7.5 years ago hzc363 ▴ 20
0
votes
1
reply
2.1k
views
Question about neqc and GEO illumina files
neqc illumina geo limma
updated 7.9 years ago by 50k • written 7.9 years ago by ▴ 30
2
votes
4
replies
1.6k
views
read bead-level data directly by lumi
bead-level GEO lumi
updated 8.2 years ago by ★ 6.5k • written 8.2 years ago by • 0
1
vote
2
replies
1.4k
views
readIllumina couln't read bead-level txt file from GEO raw data
beadarray bead-level GEO lumi
updated 8.2 years ago by ★ 6.5k • written 8.2 years ago by • 0
0
votes
1
reply
1.1k
views
data handling from GSE22216 to exprSet object
GEO
updated 8.4 years ago by ★ 6.5k • written 8.4 years ago by ▴ 10
0
votes
5
replies
1.9k
views
collect an expression dataset
limma CEL GEO affydata expresiondataset
updated 8.5 years ago by ★ 3.3k • written 8.5 years ago by • 0
0
votes
1
reply
1.3k
views
Getting data from GEO
affymetrix microarrays GEO geoquery
updated 8.5 years ago by 65k • written 8.5 years ago by • 0
5
votes
7
replies
2.0k
views
what conditions affect my gene (with limma?)
limma geo experimental design
updated 8.7 years ago by 50k • written 8.7 years ago by • 0
46 results • Page 1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
The city by the bay, 3 minutes ago
United States, 15 minutes ago
410 Lawrence Bell Dr suite 1, Buffalo, NY 14221, United States, 20 minutes ago
Italy, 30 minutes ago
India, 1 hour ago
Traffic: 422 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6