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News: European Bioconductor Conference 2023 planning
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News: Join the Technical Advisory Board
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2.7 years ago Maria Doyle ▴ 110
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News: Final List of Deprecated Package Bioc 3.9
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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2.7 years ago Maria Doyle ▴ 110
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News: Registrations are now open for BioC Asia 2022
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3.3 years ago • updated 3.2 years ago Peter Hickey ▴ 760
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: New Bioconductor Community Advisory Board Members for 2021
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4.8 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board
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News: Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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4.9 years ago Matthew Ritchie ▴ 1000
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News: Community engagement and outreach award
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5.2 years ago shepherl 4.3k
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 5.2 years ago by 43k • written 5.2 years ago by • 0
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News: Final List of Deprecated Packages for Bioc3.12
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5.3 years ago • updated 5.2 years ago shepherl 4.3k
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News: BridgeDbR devel package upgraded to BridgeDb 3
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5.2 years ago egon.willighagen ▴ 10
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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5.2 years ago kayla.interdonato ▴ 160
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5.3 years ago Laurent Gatto 1.6k
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News: List of Deprecated Packages for Bioc3.12
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5.4 years ago • updated 5.3 years ago shepherl 4.3k
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News: New Package Submission Deadline for Bioc Release 3.12
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5.3 years ago shepherl 4.3k
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News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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5.4 years ago Johannes Rainer ★ 2.1k
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News: New Package Submission Workflow Updates!
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5.8 years ago • updated 5.6 years ago shepherl 4.3k
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5.6 years ago shepherl 4.3k
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News: Award Nomination Deadline Monday June 15th!
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5.6 years ago shepherl 4.3k
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News: List of Deprecated Packages for Bioc3.12
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5.6 years ago shepherl 4.3k
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News: New Package Bioconductor Award
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News: Bioc2020 - Virtual Conference Registration
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5.6 years ago shepherl 4.3k
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News: Updated annotation packages
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5.6 years ago kayla.interdonato ▴ 160
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News: Nominations for Bioconductor Awards!
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5.7 years ago • updated 5.6 years ago shepherl 4.3k
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News: Single Package Builder / New Package Submission
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5.6 years ago shepherl 4.3k
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News: Bioconductor Technical Advisory Board Nominees, 2020
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written 5.6 years ago by 25k
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News: Public Calendar of Events
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5.7 years ago • updated 5.6 years ago shepherl 4.3k
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News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
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5.7 years ago Johannes Rainer ★ 2.1k
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News: Issues with annotation packages
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5.7 years ago kayla.interdonato ▴ 160
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News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 5.7 years ago by ▴ 160 • written 5.8 years ago by 4.3k
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News: Bioconductor 3.11 OrgDb and TxDb packages now available
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5.7 years ago kayla.interdonato ▴ 160
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News: Ensembl 100 has been released
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5.7 years ago Thomas Maurel ▴ 800
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News: Bioconductor 3.11 is Released!
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5.7 years ago shepherl 4.3k
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News: BridgeDb build fails due to website unavailability
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6.1 years ago • updated 5.7 years ago egon.willighagen ▴ 10
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News: Import Deadlines for RELEASE 3.11
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5.7 years ago shepherl 4.3k
10
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News: Professor James Taylor
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5.8 years ago Martin Morgan 25k
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News: Last Day to Submit New Packages for Bioconductor Release 3.11
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5.8 years ago shepherl 4.3k
2
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News: Bioconductor Community Advisory Board Members
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5.8 years ago Matthew Ritchie ▴ 1000
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News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
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5.8 years ago shepherl 4.3k
345 results • Page 1 of 7
Recent ...
Replies
Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 20
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Votes
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
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