2
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9
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3.6k
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STRINGdb images very low quality?
STRINGdb
updated 4.0 years ago by ▴ 110 • written 4.1 years ago by ▴ 30
0
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0
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QDNAseq Error calculateBlacklist
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4.1 years ago briverog • 0
3
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2
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Please allow integers in `numeric` format in `seqlengths`
GenomeInfoDb
updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 180
1
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2
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GEO RNASeq data query
GEOquery RNASeq GEO
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 10
0
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Trouble with gene dendrogram
Network RNASeq WGCNA
updated 3.0 years ago by • 0 • written 4.1 years ago by ▴ 10
0
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4
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Normalization by variance stabilizing transformation VST
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4.1 years ago kristoffersandas • 0
0
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5
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14k
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Cannot install clusterProfiler
clusterprofiler biocinstaller
updated 4.1 years ago by ▴ 10 • written 7.6 years ago by • 0
0
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1
reply
4.4k
views
An error has occurred! Navigation containers expect a collection of `bslib::nav()`/`shiny::tabPanel()`s and/or `bslib::nav_menu()`/`shiny::navbarMenu…
FastqCleaner
updated 3.9 years ago by • 0 • written 4.1 years ago by • 0
0
votes
3
replies
2.4k
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Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq WGCNA
4.1 years ago jms2520 ▴ 10
0
votes
2
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2.6k
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Too many genes in GO term after enrichGO
clusterProfiler enrichGO clusterPro
4.1 years ago Question1 • 0
0
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1
reply
3.0k
views
Data frame with 0 columns and 0 rows
GEOquery
updated 4.1 years ago by ▴ 780 • written 4.1 years ago by • 0
0
votes
4
replies
1.8k
views
normalizing EXOM-seq read using DESeq2
ExomeSeq DESeq2
4.1 years ago adR ▴ 40
2
votes
2
replies
5.1k
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Is it possible to coerce dataframe to enrichResult class in clusterProfiler?
clusterprofiler
updated 4.1 years ago by • 0 • written 9.1 years ago by ▴ 40
0
votes
2
replies
3.5k
views
getBM error in the biomaRt R package
Annotation
updated 3.4 years ago by • 0 • written 4.1 years ago by • 0
3
votes
2
replies
2.4k
views
Multi-level design RRBS analysis with voomLmFit
edgeR voomLmFit limma duplicateCorrelation voom
updated 14 months ago by 53k • written 4.1 years ago by • 0
0
votes
0
replies
540
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Regarding WGCNA MODULE VISUALISATION
#NETWORKS #WGCNA @KevinBlighe
4.1 years ago Karthik • 0
0
votes
0
replies
1.2k
views
TCGAAnalyze_DEA Issue, "Error in names"
miRNAseq TCGAbiolinks TCGAAnalyze_DEA
4.1 years ago Gandino • 0
0
votes
2
replies
1.2k
views
Troubleshooting DESeq2 Analysis: no DE genes found in subset
DESeq2
updated 4.1 years ago by ★ 1.4k • written 4.1 years ago by • 0
0
votes
2
replies
2.8k
views
R/Rstudio: using rtracklayer to import bigwig files from http works with MacOS but not with Windows
import.bw rtracklayer Windows http
4.1 years ago sla • 0
10
votes
23
replies
16k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
4.4 years ago • updated 3.2 years ago soda ▴ 80
0
votes
2
replies
2.9k
views
Get read counts for TCGA samples via recount3
recount3
4.2 years ago • updated 4.1 years ago mario.keller.1988 ▴ 20
0
votes
0
replies
1.5k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER HiCUP BAM HiC
4.1 years ago Ankit ▴ 20
0
votes
0
replies
1.2k
views
Job: Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
flowWorkspace CytoGLMM FlowSOM
4.1 years ago hbolouri • 0
1
vote
2
replies
1.7k
views
More than 3 dimensions in runTSNE
dimensions scater runTSNE
4.1 years ago jianhai.zhang • 0
3
votes
4
replies
1.9k
views
edgeR shows different results for same dataset
edgeR
updated 4.1 years ago by 53k • written 4.1 years ago by • 0
0
votes
7
replies
4.6k
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using limma package for paired t-test: Error: (subscript) logical subscript too long
limma limma
written 14.0 years ago by ▴ 580
0
votes
1
reply
2.4k
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convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 4.1 years ago by • 0 • written 4.1 years ago by ▴ 10
4
votes
1
reply
2.0k
views
Elastic Net for RNAseq data
Bioconductor RNASeq
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 20
0
votes
4
replies
2.4k
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Filtering output from tximport
tximport Salmon
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
0
votes
3
replies
2.2k
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Permanent error in installing GenomeInfoDb
GenomeInfoDb
4.1 years ago AZ ▴ 30
2
votes
3
replies
2.7k
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GOstats - are significantly enriched GO terms with a small "size" meaningful?
GOstats GO RNASeq
updated 4.1 years ago by 68k • written 4.1 years ago by ▴ 20
0
votes
1
reply
840
views
biomaRt query interrupted "expected a character string of length 1."
biomaRt
updated 4.1 years ago by 68k • written 4.1 years ago by • 0
5
votes
4
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XVector installation fails because zlib.h is not found
XVector docker Install
4.1 years ago RobKo ▴ 10
2
votes
2
replies
1.6k
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Block weights in scran::pairwiseTTests
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4.1 years ago Angelos Armen • 0
1
vote
1
reply
1.8k
views
scran computeSumFactors showing error
scran single cell
updated 4.1 years ago by ★ 29k • written 4.1 years ago by • 0
0
votes
1
reply
1.6k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
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written 4.1 years ago by • 0
1
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4
replies
2.8k
views
DESeq2 - VST data
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4.1 years ago AP • 0
1
vote
1
reply
1.2k
views
betaPrior and lfcShrink
DESeq2
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
0
votes
1
reply
1.6k
views
Calculating gene expression dominance coefficient via DESeq2
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updated 4.1 years ago by 43k • written 4.1 years ago by • 0
1
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2
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biomaRt connection error
biomaRt
updated 4.1 years ago by ★ 6.6k • written 4.1 years ago by ★ 5.0k
0
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0
replies
1.5k
views
Best deconvolution method
Deconvolution
4.1 years ago Barista • 0
0
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1
reply
1.2k
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quantifying exom reads featureCount
ExomeSeq featureCount
4.1 years ago adR ▴ 40
2
votes
3
replies
1.6k
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S4Vectors, strange metadata behavior
GRangesList S4Vectors
updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 80
5
votes
2
replies
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Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck style
updated 4.1 years ago by ★ 13k • written 4.1 years ago by • 0
0
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1
reply
1.2k
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WGCNA
Cancer
updated 4.1 years ago by ▴ 780 • written 4.1 years ago by • 0
0
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1
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DESeq2: Difference between two groups of conditions
factor DESeq2 MultipleComparison
updated 4.1 years ago by ★ 1.4k • written 4.1 years ago by • 0
0
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8
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2.3k
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Annotating DESeq2 Differential Expression Results
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4.1 years ago adeler001 • 0
2
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2
replies
2.0k
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Using clusterProfiler for depletion analysis
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4.1 years ago samsiljee • 0
1
vote
2
replies
2.0k
views
How GenomicFeatures cdsBy() accounts for the frame info in the gff to get the CDS?
GenomicFeatures Biostrings
4.1 years ago Madza Farias-Virgens • 0
4
votes
1
reply
1.2k
views
`promoters()` fails on `GPos` objects
GenomicRanges
updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 180
46,710 results • Page 106 of 935
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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