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1.5k
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Trouble with gene dendrogram
Network
RNASeq
WGCNA
updated 3.0 years ago by
shuo
• 0 • written 4.1 years ago by
jms2520
▴ 10
0
votes
4
replies
5.3k
views
Normalization by variance stabilizing transformation VST
library
composition
vst
DESeq2
Normalization
4.1 years ago
kristoffersandas
• 0
0
votes
5
replies
14k
views
Cannot install clusterProfiler
clusterprofiler
biocinstaller
updated 4.1 years ago by
thkapell
▴ 10 • written 7.6 years ago by
dtatarak
• 0
0
votes
1
reply
4.4k
views
An error has occurred! Navigation containers expect a collection of `bslib::nav()`/`shiny::tabPanel()`s and/or `bslib::nav_menu()`/`shiny::navbarMenu…
FastqCleaner
updated 3.9 years ago by
Jaisri
• 0 • written 4.1 years ago by
arastoo
• 0
0
votes
3
replies
2.4k
views
Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq
WGCNA
4.1 years ago
jms2520
▴ 10
0
votes
2
replies
2.5k
views
Too many genes in GO term after enrichGO
clusterProfiler
enrichGO
clusterPro
4.1 years ago
Question1
• 0
0
votes
1
reply
2.9k
views
Data frame with 0 columns and 0 rows
GEOquery
updated 4.1 years ago by
Basti
▴ 780 • written 4.1 years ago by
墨
• 0
0
votes
4
replies
1.8k
views
normalizing EXOM-seq read using DESeq2
ExomeSeq
DESeq2
4.1 years ago
adR
▴ 40
2
votes
2
replies
5.1k
views
Is it possible to coerce dataframe to enrichResult class in clusterProfiler?
clusterprofiler
updated 4.1 years ago by
adriangeerre
• 0 • written 9.1 years ago by
snamjoshi87
▴ 40
0
votes
2
replies
3.5k
views
getBM error in the biomaRt R package
Annotation
updated 3.4 years ago by
qiz218591
• 0 • written 4.1 years ago by
arungowda9738
• 0
3
votes
2
replies
2.4k
views
Multi-level design RRBS analysis with voomLmFit
edgeR
voomLmFit
limma
duplicateCorrelation
voom
updated 14 months ago by
Gordon Smyth
53k • written 4.1 years ago by
altintas.ali
• 0
0
votes
0
replies
540
views
Regarding WGCNA MODULE VISUALISATION
#NETWORKS
#WGCNA
@KevinBlighe
4.1 years ago
Karthik
• 0
0
votes
0
replies
1.2k
views
TCGAAnalyze_DEA Issue, "Error in names"
miRNAseq
TCGAbiolinks
TCGAAnalyze_DEA
4.1 years ago
Gandino
• 0
0
votes
2
replies
1.2k
views
Troubleshooting DESeq2 Analysis: no DE genes found in subset
DESeq2
updated 4.1 years ago by
swbarnes2
★ 1.4k • written 4.1 years ago by
Sophie Nicole
• 0
0
votes
2
replies
2.8k
views
R/Rstudio: using rtracklayer to import bigwig files from http works with MacOS but not with Windows
import.bw
rtracklayer
Windows
http
4.1 years ago
sla
• 0
10
votes
23
replies
16k
views
Macbook M1 install genefilter failed
DESeq2
m1
macbook
genefilter
4.4 years ago • updated 3.2 years ago
soda
▴ 80
0
votes
2
replies
2.9k
views
Get read counts for TCGA samples via recount3
recount3
4.2 years ago • updated 4.1 years ago
mario.keller.1988
▴ 20
0
votes
0
replies
1.5k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
4.1 years ago
Ankit
▴ 20
0
votes
0
replies
1.2k
views
Job:
Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
flowWorkspace
CytoGLMM
FlowSOM
4.1 years ago
hbolouri
• 0
1
vote
2
replies
1.7k
views
More than 3 dimensions in runTSNE
dimensions
scater
runTSNE
4.1 years ago
jianhai.zhang
• 0
3
votes
4
replies
1.9k
views
edgeR shows different results for same dataset
edgeR
updated 4.1 years ago by
Gordon Smyth
53k • written 4.1 years ago by
bioinformaticssrm2011
• 0
0
votes
7
replies
4.6k
views
using limma package for paired t-test: Error: (subscript) logical subscript too long
limma
limma
written 14.0 years ago by
viritha kaza
▴ 580
0
votes
1
reply
2.4k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 4.1 years ago by
lida
• 0 • written 4.1 years ago by
capricygcapricyg
▴ 10
4
votes
1
reply
2.0k
views
Elastic Net for RNAseq data
Bioconductor
RNASeq
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
Miguel
▴ 20
0
votes
4
replies
2.4k
views
Filtering output from tximport
tximport
Salmon
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
Sheean
• 0
0
votes
3
replies
2.2k
views
Permanent error in installing GenomeInfoDb
GenomeInfoDb
4.1 years ago
AZ
▴ 30
2
votes
3
replies
2.7k
views
GOstats - are significantly enriched GO terms with a small "size" meaningful?
GOstats
GO
RNASeq
updated 4.1 years ago by
James W. MacDonald
68k • written 4.1 years ago by
joasmile84
▴ 20
0
votes
1
reply
837
views
biomaRt query interrupted "expected a character string of length 1."
biomaRt
updated 4.1 years ago by
James W. MacDonald
68k • written 4.1 years ago by
alexandre.raposo
• 0
5
votes
4
replies
5.8k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
4.1 years ago
RobKo
▴ 10
2
votes
2
replies
1.6k
views
Block weights in scran::pairwiseTTests
scran
4.1 years ago
Angelos Armen
• 0
1
vote
1
reply
1.8k
views
scran computeSumFactors showing error
scran
single
cell
updated 4.1 years ago by
Aaron Lun
★ 29k • written 4.1 years ago by
hemantcnaik
• 0
0
votes
1
reply
1.6k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 4.1 years ago by
Lillian
• 0
1
vote
4
replies
2.8k
views
DESeq2 - VST data
DESeq2
VST
4.1 years ago
AP
• 0
1
vote
1
reply
1.2k
views
betaPrior and lfcShrink
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
shepherd.forjesus
• 0
0
votes
1
reply
1.6k
views
Calculating gene expression dominance coefficient via DESeq2
RNASeq
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
Philipp.kaufmann
• 0
1
vote
2
replies
1.6k
views
biomaRt connection error
biomaRt
updated 4.1 years ago by
Mike Smith
★ 6.6k • written 4.1 years ago by
ATpoint
★ 5.0k
0
votes
0
replies
1.5k
views
Best deconvolution method
Deconvolution
4.1 years ago
Barista
• 0
0
votes
1
reply
1.1k
views
quantifying exom reads featureCount
ExomeSeq
featureCount
4.1 years ago
adR
▴ 40
2
votes
3
replies
1.6k
views
S4Vectors, strange metadata behavior
GRangesList
S4Vectors
updated 4.1 years ago by
Hervé Pagès
16k • written 4.1 years ago by
hauken_heyken
▴ 80
5
votes
2
replies
1.5k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 4.1 years ago by
Steve Lianoglou
★ 13k • written 4.1 years ago by
pouryany
• 0
0
votes
1
reply
1.2k
views
WGCNA
Cancer
updated 4.1 years ago by
Basti
▴ 780 • written 4.1 years ago by
aikaterinilama
• 0
0
votes
1
reply
1.2k
views
DESeq2: Difference between two groups of conditions
factor
DESeq2
MultipleComparison
updated 4.1 years ago by
swbarnes2
★ 1.4k • written 4.1 years ago by
diegocastano182
• 0
0
votes
8
replies
2.3k
views
Annotating DESeq2 Differential Expression Results
biomaRt
DESeq2
4.1 years ago
adeler001
• 0
2
votes
2
replies
2.0k
views
Using clusterProfiler for depletion analysis
clusterProfiler
enrichGO
4.1 years ago
samsiljee
• 0
1
vote
2
replies
2.0k
views
How GenomicFeatures cdsBy() accounts for the frame info in the gff to get the CDS?
GenomicFeatures
Biostrings
4.1 years ago
Madza Farias-Virgens
• 0
4
votes
1
reply
1.2k
views
`promoters()` fails on `GPos` objects
GenomicRanges
updated 4.1 years ago by
Hervé Pagès
16k • written 4.1 years ago by
Charles Plessy
▴ 180
0
votes
0
replies
1.2k
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
4.1 years ago
bradyb
• 0
6
votes
4
replies
2.4k
views
Which rlog should I use for DESeq2 analysis
samples
rlog
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
rafaelsolersanblas
▴ 50
0
votes
0
replies
1.1k
views
BiocParallel errors in XCMS peak-picking
BiocParallel
xcms
biocparallel
4.1 years ago
noerman
• 0
0
votes
5
replies
2.1k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
4.2 years ago • updated 3.7 years ago
shepherl
4.2k
46,706 results • Page
106 of 935
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Just like attending workshops helps you improve skills in a field, playing 8 Ball Pool helps sharpen your strategy and precision. You can d…
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Comment: ATACseq rudimentary questions
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Thank you so much for being detailed, all makes sense now
Answer: How to do differential expresion across time serise with edgeR?
by
Gordon Smyth
53k
You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…
Answer: ATACseq rudimentary questions
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★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
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