1
vote
2
replies
2.1k
views
How GenomicFeatures cdsBy() accounts for the frame info in the gff to get the CDS?
GenomicFeatures Biostrings
4.2 years ago • updated 4.1 years ago Madza Farias-Virgens • 0
4
votes
1
reply
1.2k
views
`promoters()` fails on `GPos` objects
GenomicRanges
updated 4.2 years ago by 16k • written 4.2 years ago by ▴ 180
0
votes
0
replies
1.2k
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
4.2 years ago bradyb • 0
6
votes
4
replies
2.4k
views
Which rlog should I use for DESeq2 analysis
samples rlog DESeq2
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 50
0
votes
0
replies
1.1k
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
4.2 years ago noerman • 0
0
votes
5
replies
2.1k
views
News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
4.2 years ago • updated 3.7 years ago shepherl 4.3k
0
votes
0
replies
903
views
ChIPpeakAnno: No seqlevelsStyle compatible entry
ChIPSeqData
4.2 years ago tom.dean • 0
0
votes
1
reply
1.7k
views
Summarising WGCNA data with modules and their corresponding gene ID and statistics
RNASeq WGCNA
4.2 years ago synat.keam • 0
2
votes
3
replies
4.0k
views
How to get longest isoform
GenomicFeatures Biostrings
updated 4.2 years ago by 16k • written 4.2 years ago by • 0
1
vote
2
replies
1.6k
views
NAs in my txdb tx_name
GenomicFeatures Biostrings
4.2 years ago Madza Farias-Virgens • 0
0
votes
5
replies
2.1k
views
95% confidence intervals for PCA in DESEQ2
DESEQ2 DESeq2
4.2 years ago tylerdodgeball2019 • 0
5
votes
6
replies
3.3k
views
NA transcript values in my Txdb
GFF txdb
updated 4.2 years ago by 68k • written 4.2 years ago by ▴ 20
1
vote
3
replies
1.6k
views
Error "unauthorized" in avtable_import
AnVIL
4.2 years ago • updated 4.1 years ago Stephanie M. Gogarten ▴ 890
2
votes
3
replies
2.3k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 4.2 years ago by ★ 13k • written 4.2 years ago by ▴ 50
0
votes
3
replies
946
views
Which interactions terms to choose?
interac DESeq2
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
0
votes
0
replies
1.4k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
4.2 years ago Shane • 0
2
votes
2
replies
1.4k
views
Why `downstream` is set to 200 in the `GenomicFeatures::promoters` function
GenomicFeatures
updated 4.2 years ago by 16k • written 4.2 years ago by • 0
1
vote
5
replies
2.3k
views
PureCN C (integer segment copy number) in curated samples
PureC PureCN
updated 4.2 years ago by ▴ 130 • written 4.2 years ago by ▴ 10
1
vote
2
replies
1.7k
views
Which factors to include in design matrix and how to do it in a challenging experimental design
RNAseq Design Matrix
4.2 years ago Barista • 0
0
votes
0
replies
1.4k
views
RCurl installation failure
R
4.2 years ago conbward • 0
0
votes
0
replies
1.3k
views
Job: Bioinformatics scientist (Full-time/Permanent) for the analysis of multiomics data in oncology
bioinformatics omics R oncology France
4.2 years ago vincent.piras • 0
0
votes
6
replies
1.7k
views
DESeq2 log2Foldchange issue
DESeq2
4.2 years ago Cheryl • 0
0
votes
1
reply
1.1k
views
Variation in number of DEGs on LFC shrinkage
DESeq2 lfcShrink
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
0
votes
0
replies
846
views
Gene expression changes in one condition
RNASeq Gene ExpressionData
4.2 years ago AZ ▴ 20
0
votes
0
replies
1.0k
views
Can I quantify the number of mismatches post alignment?
msa
4.2 years ago Field -Ye • 0
0
votes
2
replies
1.1k
views
CSAW Users Guide Ch 4-6 are not accessible/readable
csaw csawUsersGuide
updated 4.2 years ago by ★ 29k • written 4.2 years ago by • 0
1
vote
2
replies
1.4k
views
Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment splatter
4.2 years ago Fatima • 0
1
vote
2
replies
3.6k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
4.2 years ago lexi.kellington • 0
1
vote
2
replies
1.6k
views
Building BSgenome package fails - .make_BSgenome_seqinfo error: sequence names found in .2bit file are not identical to 'seqnames'
BSGenome Forge
4.2 years ago geo.vogler ▴ 10
0
votes
3
replies
1.2k
views
Complex Contrast in DESeq2
DESeq2
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
1
vote
1
reply
1.1k
views
affycoretools - improve error message in annotateEset(ExpressionSet, AffyExpressionPDInfo)
affycoretools
updated 4.2 years ago by 68k • written 4.2 years ago by ▴ 180
1
vote
2
replies
1.4k
views
How to include/show/add correction factors/numbers to the Diffbind heat map tiles
DiffBind
updated 4.2 years ago by ▴ 60 • written 4.2 years ago by • 0
0
votes
2
replies
3.4k
views
Mean-variance trend and identifying significant DE with large amount of biological change in expression in time-series data
voom
4.2 years ago • updated 4.1 years ago hmviit • 0
0
votes
0
replies
1.1k
views
Proper normalization of batch effected corrected raw rsem rnaseq values for downstream unsupervised analyses
limma RNASeq rsem Normalization
4.2 years ago svlachavas ▴ 840
3
votes
4
replies
13k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 3.3 years ago by • 0 • written 4.2 years ago by • 0
0
votes
4
replies
2.3k
views
rtracklayer can't access hg38 on UCSC?
rtracklayer Visualization
updated 4.2 years ago by 16k • written 4.2 years ago by • 0
2
votes
0
replies
1.0k
views
PREDA shiny Golem issue
PREDAsampledata PREDA Biobase
4.2 years ago Gavin ▴ 20
0
votes
0
replies
1.0k
views
Bug in rtracklayer
rtracklayer
4.2 years ago You • 0
0
votes
1
reply
3.1k
views
How to remove duplicate files per case in TCGAbiolonks
TCGAbiolinks
4.2 years ago raf4 ▴ 30
1
vote
1
reply
8.4k
views
error: Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'NULL'
PackageLoading
updated 4.2 years ago by ★ 6.6k • written 4.2 years ago by • 0
0
votes
2
replies
1.3k
views
CRISPRseek package: findgRNAs error
CRISPRseek
4.2 years ago nderian ▴ 10
0
votes
2
replies
1.2k
views
R/Bioconductor package for Circulating Cell-Free DNA data analysis
SequencingData
4.3 years ago • updated 4.2 years ago adR ▴ 40
0
votes
1
reply
1.5k
views
upset-style plot to show marginal intersections
UpsetPlot
updated 4.2 years ago by ▴ 760 • written 4.2 years ago by • 0
0
votes
2
replies
1.6k
views
DESeq2 interaction terms in 2x2x2 factorial design
Interactions design Multifactorial DESeq2
updated 4.2 years ago by ★ 1.4k • written 4.2 years ago by • 0
6
votes
7
replies
3.6k
views
GEOquery reading error on Windows.
GEOquery GEO Gene
updated 4.2 years ago by 68k • written 4.2 years ago by ▴ 50
0
votes
0
replies
750
views
genbankr throwing C stack usage error when reading in files >500Kb
genbankr
4.2 years ago Lauren • 0
0
votes
5
replies
1.8k
views
Is there a way to get the confidence interval for the fold change generated on DESeq2
DESeq2
4.2 years ago adeler001 • 0
4
votes
4
replies
6.8k
views
FeatureCounts
counts subread RNASeq featurecounts
4.2 years ago k___ ▴ 30
0
votes
1
reply
1.1k
views
write a for loop for searching TF with TFBSTools
TFBSTools R forloop
updated 4.2 years ago by • 0 • written 4.2 years ago by • 0
1
vote
5
replies
2.4k
views
slow bplapply?
BiocParallel
4.2 years ago • updated 3.1 years ago Wu, Hao ▴ 20
46,712 results • Page 107 of 935
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Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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