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replies
1.2k
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Job:
Bioinformatician-Cancer Biology - Fred Hutchinson Cancer Research Center (Seattle, WA)
SEATTLE
WASHINGTON
WASHINGTON STATE
BIOINFORMATICS
COMPUTATIONAL BIOLOGY
Job
5.9 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Analyst I-II - Fred Hutchinson Cancer Research Center (Seattle, WA)
SEATTLE
WASHINGTON STATE
WASHINGTON
BIOINFORMATICS
Job
5.9 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
1.3k
views
No methods found in package Biobase for request: read.AnnotatedDataFrame
software error
biobase
Iranges
ArrayExpressHTS
5.9 years ago
Ed Siefker
▴ 230
1
vote
1
reply
1.5k
views
SVA paired samples
SVA
EPIC
methylation
limma
updated 5.9 years ago by
James W. MacDonald
68k • written 5.9 years ago by
whyw6948
• 0
1
vote
5
replies
675
views
Microarray expression analysis
normalization
updated 5.9 years ago by
James W. MacDonald
68k • written 5.9 years ago by
manuchandwadkar
• 0
0
votes
3
replies
1.4k
views
DESeq2 accounting for two confounders with interaction in the design matrix
deseq2
design matrix
multi-confounders
linear models
rna-seq
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
mohamedrefaat.1.1992
• 0
0
votes
2
replies
1.5k
views
hg38 tracks for AnnotationHub
annotationhub
5.9 years ago
Michael Love
43k
0
votes
0
replies
1.5k
views
lumi / RSQLite warning
lumi
5.9 years ago
stewart999
▴ 10
1
vote
3
replies
1.5k
views
DESeq2 - controlling for other variables
deseq2
DEG
covariate
study design
variables
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
Yonatan Amzaleg
• 0
33
votes
0
replies
45k
views
limma moderated t-statistics and B-statistics
Microarray
limma
21.4 years ago • updated 5.3 years ago
Gordon Smyth
53k
1
vote
1
reply
511
views
DESeq2: Identify similarly expressed genes
deseq2
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
wangy660
• 0
2
votes
6
replies
3.5k
views
rtracklayer: error in importing bigwig file in r in windows
rtracklayer
bigwig file
updated 4.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 5.9 years ago by
mzwanelen
▴ 10
0
votes
1
reply
1.2k
views
getting snp and restriction Enzyme site from ucsc genome browswer
rtracklayer
updated 5.9 years ago by
Michael Lawrence
★ 11k • written 5.9 years ago by
prabin.dm
• 0
0
votes
0
replies
1.1k
views
Strange problem with parameter range when creating a flowFPModel
flowCore
flowFP
flowFPModel
5.9 years ago
palffy.karoly
• 0
1
vote
2
replies
953
views
BiomaRt and phytozome: error in return results
Biomart
phytozome
5.9 years ago
l.willianpacheco
• 0
0
votes
8
replies
1.5k
views
DESeq2 notice about GLM convergence
deseq2
RNASeq
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
stephen.hartley
• 0
2
votes
7
replies
1.2k
views
Cannot install the FlowWorkSpaceData package
software error
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
a.f.girigorie
▴ 10
0
votes
2
replies
1.7k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz
plotTracks
updated 5.9 years ago by
Robert Ivanek
▴ 750 • written 5.9 years ago by
syliang
• 0
0
votes
1
reply
1.2k
views
News:
Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
conference
bioc2020
event
deadline
News
5.9 years ago
shepherl
4.3k
3
votes
3
replies
2.0k
views
Repeated error loading DESqe2 - package xxx not found
deseq2
package
software error
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
DcL-A
• 0
1
vote
1
reply
890
views
DiffBind t-statistic values
r
DiffBind
ATAC
updated 5.9 years ago by
Rory Stark
★ 5.2k • written 5.9 years ago by
lindsaynhayes
• 0
0
votes
4
replies
3.5k
views
Compilation error when attempting to install GenomicRanges from BiocManager.
software error
GenomicRanges
5.9 years ago
atheeth14
• 0
1
vote
1
reply
1.2k
views
WGCNA sample number reduction
wgcna
networkanalysis
updated 5.9 years ago by
shepherl
4.3k • written 5.9 years ago by
anjanaram1
▴ 10
1
vote
2
replies
1.4k
views
Any possibility to "cache" TxDb object?
GenomicFeatures
TxDb
updated 5.9 years ago by
Steve Lianoglou
★ 13k • written 5.9 years ago by
aush
▴ 40
0
votes
8
replies
1.9k
views
Failed to read SDRF
software error
arrayexpressHTS
5.9 years ago
Ed Siefker
▴ 230
0
votes
1
reply
875
views
Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
5.9 years ago
mawusse.agbessi
• 0
0
votes
1
reply
2.5k
views
I have installed "muscle", but package will not work
muscle
BiocManager
updated 5.9 years ago by
shepherl
4.3k • written 5.9 years ago by
coberkfell20
• 0
2
votes
4
replies
843
views
Microarray expression analysis
normalization
updated 5.9 years ago by
James W. MacDonald
68k • written 5.9 years ago by
manuchandwadkar
• 0
0
votes
6
replies
2.2k
views
Bizarre Dispersion Plots
deseq2
RNA
RNASeq
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
stephen.hartley
• 0
0
votes
1
reply
1.4k
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 5.9 years ago by
shepherl
4.3k • written 5.9 years ago by
bwiley4
• 0
0
votes
0
replies
1.1k
views
News:
Bioc2020 - Deadline for workshops/talk/poster TOMORROW
bioc2020
event
conference
bioconductor
News
5.9 years ago
shepherl
4.3k
3
votes
4
replies
3.7k
views
limma: comparison of repeat measurements - blocking or within-subject correlation?
limma
repeated measurements
blocking
random effects
updated 5.9 years ago by
Gordon Smyth
53k • written 5.9 years ago by
Jane
▴ 10
0
votes
1
reply
1.1k
views
about the ChAMP package, the champ.norm output different results,when run it twice on epic data.
ChAMP
updated 5.9 years ago by
Yuan Tian
▴ 290 • written 5.9 years ago by
olive8306
• 0
2
votes
9
replies
2.9k
views
S4Vectors not loading
S4Vectors
5.9 years ago
Panos Balomenos
• 0
2
votes
2
replies
1.3k
views
RNA-seq analysis with DESeq2
deseq2
updated 5.9 years ago by
mikhael.manurung
▴ 280 • written 5.9 years ago by
alexandr.gopanenko
▴ 50
1
vote
0
replies
1.7k
views
Job:
Postdoctoral position in statistical genomics (UNC Chapel Hill)
postdoc
Job
7.0 years ago • updated 5.9 years ago
Michael Love
43k
2
votes
0
replies
981
views
News:
[CDSB] From Bioconductor users to developers: our first community submission
CDSB
News
5.9 years ago
Leonardo Collado Torres
★ 1.1k
3
votes
1
reply
1.4k
views
News:
[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
spatialLIBD
News
written 5.9 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
0
replies
1.5k
views
Job:
Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer
computational biology
bioinformatics
epigenetics
Job
5.9 years ago
Shamith.Samarajiwa
▴ 180
2
votes
8
replies
1.6k
views
DESEQ2 design with unequal matching and replicates?
deseq2
RNASeq
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
divyak
• 0
2
votes
3
replies
762
views
The basis for the full rank design matrix requirement in DESeq2
deseq2
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
Nik Tuzov
▴ 90
0
votes
0
replies
679
views
synergyfinder function requires SpatialExtremes
synergyfinder
5.9 years ago
Solarion
• 0
3
votes
6
replies
5.8k
views
R package for single-cell RNA-seq data from fastq to matrix
single cell
updated 5.9 years ago by
Aaron Lun
★ 29k • written 5.9 years ago by
yueli7
▴ 20
2
votes
8
replies
2.5k
views
Bias towards significantly negative logFCs in ATAC-Seq differential chromatin openness tests
limma
edger
atac
atac-seq
updated 5.9 years ago by
Aaron Lun
★ 29k • written 5.9 years ago by
pgugger
▴ 70
1
vote
4
replies
1.3k
views
error in SCnorm
scnorm
5.9 years ago
yueli7
▴ 20
1
vote
1
reply
1.2k
views
MEDIPS.CpGenrich now that RangedData is deprecated
MEDIPS
RangedData
GenomicRanges
updated 5.9 years ago by
Lukas Chavez
▴ 570 • written 5.9 years ago by
emham
• 0
0
votes
0
replies
1.4k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.9 years ago
shepherl
4.3k
0
votes
2
replies
761
views
DESeq2 error on function results
deseq2
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
jrossol
• 0
0
votes
1
reply
1.5k
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2
plotMA
rnaseq
community analysis
asymmetry
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
chaco001
• 0
0
votes
0
replies
720
views
Program to calculate genetic distances with long sequences
probe
go
5.9 years ago
antoniorevail
• 0
46,730 results • Page
177 of 935
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Comment: Open Positions for Doctoral Researchers in Molecular Medicine
by
TikTs33ssalpc
• 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
Comment: Bioconductor Maintainer Application
by
TikTs33ssalpc
• 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa
by
ATpoint
★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help
by
Jeremy
• 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
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Answer: When to use edgeR or limma
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