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0
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1.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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5.9 years ago rafaelsolersanblas ▴ 50
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1
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ChIPSeeker - options(ChIPseeker.downstreamDistance = 500) seems not work
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5.9 years ago Guandong Shang ▴ 40
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2
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updated 3.6 years ago by • 0 • written 5.9 years ago by ▴ 10
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Suggestion for circlize package in R for plotting the datasets
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5.9 years ago sinha.puja ▴ 10
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632
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updated 5.9 years ago by 43k • written 5.9 years ago by ▴ 120
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2
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2.1k
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updated 5.9 years ago by ★ 4.0k • written 5.9 years ago by ▴ 10
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updated 5.9 years ago by ★ 4.1k • written 5.9 years ago by • 0
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Job: Postdoc/research scientist in bioinformatics, Lund, Sweden
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714
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Mathematical View of Timmer Mean of M-values
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updated 5.9 years ago by 53k • written 6.0 years ago by • 0
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6
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ChIPQC error: 'names' attribute [9] must be the same length as the vector [7]
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updated 5.9 years ago by • 0 • written 6.6 years ago by • 0
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845
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Loading 1000 g data: Error in `.rowNamesDF<-`(x, value = value): duplicate 'row.names' are not allowed
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5.9 years ago lxiao63 • 0
1
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1
reply
638
views
Unable to load fabbia using R 3.6.2:Cannoy launch library(RcmdrPlugin.BiclustGUI)
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updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 10
0
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0
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cn.MOPS output - mean/median of what?
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5.9 years ago liorglic ▴ 10
0
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2
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971
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arrayQualityMetrics R for outlier detection
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updated 5.9 years ago by 53k • written 6.0 years ago by ▴ 20
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Query relating pathway enrichment analysis for DEGs using KEGG or any other database.
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updated 5.9 years ago by 53k • written 6.3 years ago by ▴ 50
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updated 5.9 years ago by 53k • written 6.0 years ago by ▴ 50
9
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10
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6.4 years ago • updated 5.9 years ago omarrafiqued ▴ 50
2
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Is it possible to remove 3 batches categories using limma
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updated 5.9 years ago by 43k • written 5.9 years ago by ▴ 60
0
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2
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Problem for loading Bioconductor package in R
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written 5.9 years ago by • 0
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0
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metaDE R and RRA R
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6.0 years ago lily ▴ 20
1
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1
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1.1k
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Rtracklayer fails to export TxDb as GFF3 without CDS
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updated 6.0 years ago by ★ 11k • written 6.0 years ago by • 0
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4
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4.0k
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extract TCGA barcodes and sample_type information from uuids
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updated 4.4 years ago by ▴ 60 • written 6.0 years ago by ▴ 30
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1
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1.0k
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digest and ps none zero exit status
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updated 6.0 years ago by 68k • written 6.0 years ago by • 0
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1
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530
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DESeq2: multiple factors, comparison of a main factor between samples with inconsistent magnitudes of gene expression changes
deseq2
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 10
0
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1
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1.4k
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How to modify centromere depiction in Gviz IdeogramTrack?
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updated 6.0 years ago by ▴ 750 • written 6.5 years ago by ▴ 10
2
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2
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1.7k
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Microarray expression analysis
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updated 6.0 years ago by 68k • written 6.0 years ago by • 0
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DiffBind MA plot annotate promoter regions with different colour
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updated 6.0 years ago by ★ 5.2k • written 6.0 years ago by ▴ 10
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3
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EdgeR - How to define a group when calculating BCV
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updated 6.0 years ago by ▴ 900 • written 6.0 years ago by • 0
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2
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"S" bases on mapFromAlignments - counted or not?
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updated 6.0 years ago by 16k • written 6.0 years ago by • 0
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6
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Rsamtools pileup function
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updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 10
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6
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Design to analyze experiment with multiple samples from the same biological entity
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updated 6.0 years ago by ★ 13k • written 6.0 years ago by • 0
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Job: Research scientist in bioinformatics, Sweden
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6.0 years ago mauno.vihinen • 0
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0
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RNAseq/miRNAseq normalization for calculating gene correlations, survival analysis, and exploratory graphing
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6.0 years ago atakanekiz ▴ 30
1
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4
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1.9k
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How to obtain the two gene expression datasets from a dual channel GEO dataset?
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updated 6.0 years ago by 53k • written 6.0 years ago by • 0
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8
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Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
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6.0 years ago alipka ▴ 10
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updated 6.0 years ago by ▴ 160 • written 6.0 years ago by • 0
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1.1k
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DESeq2 with uneven group size
deseq2
updated 6.0 years ago by 43k • written 6.0 years ago by • 0
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1
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biomaRt package not working in R version3.6
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updated 6.0 years ago by 68k • written 6.0 years ago by • 0
4
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biomaRt getSequence fails with genomic coordinates
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updated 6.0 years ago by ★ 6.6k • written 6.0 years ago by ▴ 10
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Fix regions for bumphunter
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6.0 years ago i.s.brorson • 0
0
votes
2
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1.4k
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Bumphunter output "regions" of 1 probe (L =1)
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6.0 years ago i.s.brorson • 0
3
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4
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4.2k
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lm.fit incompatible dimensions
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updated 6.0 years ago by • 0 • written 7.0 years ago by • 0
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1
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817
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limma how to extract rest of output
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updated 6.0 years ago by ★ 13k • written 6.0 years ago by • 0
0
votes
1
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2.7k
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RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
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updated 6.0 years ago by 43k • written 6.0 years ago by • 0
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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6.0 years ago shepherl 4.3k
1
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1
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1.2k
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is something like method="wget" possible with BiocManager::install ?
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updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 10
0
votes
1
reply
595
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1.
software error
updated 6.0 years ago by ★ 6.6k • written 6.0 years ago by • 0
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3
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DESeq2 : Estimating dispersions takes forever to finish
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6.0 years ago Nicolas Rosewick ▴ 20
4
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5
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All genes display positive fold change in topTable results after limma
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updated 6.0 years ago by 53k • written 6.0 years ago by ▴ 40
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