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526
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I am trying to detect alternative splicing.
ASpli
20 months ago
Sebashish
• 0
4
votes
2
replies
972
views
Cannabis and KEGGgraph
KEGGREST
GenomicDistributionsData
KEGGgraph
KEGG
updated 20 months ago by
Guido Hooiveld
★ 4.1k • written 20 months ago by
fernanda.backsouza
▴ 30
1
vote
3
replies
982
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
bas_work
▴ 30
2
votes
2
replies
1.7k
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
sansan
• 0
1
vote
0
replies
8.9k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
20 months ago
BioinfGuru
▴ 70
4
votes
6
replies
1.9k
views
FilterByExpr low counts with small sample size
edgeR
20 months ago
Jonathan
▴ 10
0
votes
2
replies
739
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
20 months ago
prity6459
• 0
0
votes
3
replies
1.0k
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 20 months ago by
Gordon Smyth
53k • written 20 months ago by
prity6459
• 0
5
votes
3
replies
1.6k
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 20 months ago by
Gordon Smyth
53k • written 20 months ago by
Shaimaa Gamal
• 0
0
votes
8
replies
2.9k
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
updated 18 months ago by
alserg
▴ 280 • written 20 months ago by
sropri
• 0
0
votes
3
replies
903
views
Different number of exons in reference genome affects DEXSeq analysis
DEXSeq
updated 20 months ago by
Alejandro Reyes
★ 1.9k • written 20 months ago by
Alessia
• 0
0
votes
1
reply
698
views
Adding columns to DEXSeqResults object
DEXSeq
updated 20 months ago by
Alejandro Reyes
★ 1.9k • written 20 months ago by
Clyde
• 0
0
votes
0
replies
465
views
Warning while loading DEP package
DEP
updated 20 months ago by
shepherl
4.2k • written 20 months ago by
Namrata
• 0
0
votes
1
reply
462
views
rlog transformation
DESeq2
updated 20 months ago by
Michael Love
43k • written 20 months ago by
ishij9717
• 0
0
votes
1
reply
1.4k
views
ONT long-read RNA sequencing - data analysis options
DESeq2
LongRead
DEXSeq
IsoformSwitchAnalyzeR
RNASeq
updated 20 months ago by
Michael Love
43k • written 20 months ago by
09191919
• 0
1
vote
2
replies
3.5k
views
DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
20 months ago
Patadù
▴ 20
0
votes
1
reply
440
views
covariate with negative and positive values
DESeq2
updated 20 months ago by
Michael Love
43k • written 20 months ago by
Brynn
• 0
0
votes
1
reply
472
views
DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 20 months ago by
ATpoint
★ 5.0k • written 20 months ago by
quanah.hudson
• 0
1
vote
2
replies
1.0k
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
20 months ago
Le
• 0
1
vote
2
replies
756
views
Error in champ.load(): The following specified files do not exist
ChAMP
20 months ago
Sherin
• 0
0
votes
1
reply
461
views
Input Question for deseq.r
RSeqAn
updated 20 months ago by
ATpoint
★ 5.0k • written 20 months ago by
Nina
• 0
0
votes
4
replies
985
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
20 months ago
lonn
• 0
0
votes
7
replies
2.5k
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
20 months ago
hortense96
• 0
0
votes
1
reply
628
views
News:
Services
flowBeads
written 20 months ago by
creativepeptides2018
• 0
0
votes
0
replies
658
views
Enzyme Engineering
BioTIP
20 months ago
bocchemistry
• 0
0
votes
0
replies
616
views
News:
TIDES USA 2024
flowBeads
20 months ago
bocsci11
▴ 10
0
votes
0
replies
419
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
20 months ago
Maliha Tabassum
• 0
0
votes
4
replies
805
views
flowStats Search Error
flowStats
updated 20 months ago by
shepherl
4.2k • written 20 months ago by
tholmes
• 0
3
votes
18
replies
4.9k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
2.5 years ago • updated 20 months ago
shepherl
4.2k
0
votes
1
reply
720
views
SNP locus package for mouse?
SNPlocs
packFinder
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
tian.liu0720
• 0
1
vote
2
replies
2.6k
views
geneList error in clusterprofiler
clusterProfiler
GeneSetEnrichment
20 months ago
Ana
• 0
0
votes
1
reply
610
views
what is the sampleFiles
chipseq
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
zhulin
• 0
1
vote
1
reply
1.1k
views
Differentially expressed genes in monocle pseudotime
monocle
updated 20 months ago by
Gordon Smyth
53k • written 20 months ago by
kthapa
• 0
4
votes
9
replies
1.8k
views
Memory errors using read.bismark?
dmrseq
bsseq
20 months ago
Juan Higareda
• 0
3
votes
3
replies
1.7k
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
20 months ago
jacques.imbert
• 0
1
vote
1
reply
687
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 20 months ago by
kamryncole1963
• 0 • written 20 months ago by
Sara
• 0
0
votes
3
replies
801
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 20 months ago by
Michael Love
43k • written 20 months ago by
andrebolerbarros
▴ 20
0
votes
0
replies
553
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
20 months ago
Virangika
• 0
0
votes
0
replies
642
views
[ChIPseeker] Unable to perform gene ontology analysis
ChIPseeker
20 months ago
Henry
▴ 10
1
vote
2
replies
991
views
How to retrieve detailed regression results from deseq2
DESeq2
20 months ago
Weiqian
▴ 10
0
votes
4
replies
1.0k
views
DEG with low counts
DESeq2
updated 20 months ago by
Michael Love
43k • written 20 months ago by
Rajat
• 0
1
vote
2
replies
6.2k
views
GSVA error
GSVA
20 months ago
Alex
• 0
2
votes
3
replies
1.7k
views
ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with variable number of continuous columns
ComplexHeatmap
20 months ago
daniel.carbajo
• 0
3
votes
3
replies
1.9k
views
permutation test in edgeR
rna-seq
edgeR
updated 20 months ago by
Gordon Smyth
53k • written 21 months ago by
Netanel
• 0
1
vote
3
replies
985
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 20 months ago by
Gordon Smyth
53k • written 20 months ago by
Simran
• 0
0
votes
1
reply
441
views
Deseq2 Rlog transformation
DESeq2
updated 20 months ago by
ATpoint
★ 5.0k • written 20 months ago by
Sahar
• 0
1
vote
2
replies
816
views
Design Matrix within group comparison more than two groups
DESeq2
20 months ago
hemantcnaik
• 0
2
votes
4
replies
2.4k
views
How many of my genes from my gene list are in each KEGG pathway?
Pathways
clusterProfiler
gseKEGG
KEGG
written 20 months ago by
julia_mcdonough
• 0
2
votes
2
replies
1.1k
views
[DiffBind] Obtaining normalization factors
DiffBind
20 months ago
Henry
▴ 10
0
votes
1
reply
645
views
Bioinformatics student
Des
DESeq2
updated 20 months ago by
hemantcnaik
• 0 • written 20 months ago by
Sahar
• 0
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