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18
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 28 days ago shepherl 3.9k
7
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28
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Rsubread::featureCounts extremely slow on some annotations
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updated 3 months ago by 50k • written 9.2 years ago by ★ 7.9k
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News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
10 weeks ago • updated 22 days ago shepherl 3.9k
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21
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limma, analysis on subset of data gives completely different results
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updated 6 weeks ago by 50k • written 9.8 years ago by ▴ 40
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masigpro
updated 9 months ago by • 0 • written 8.9 years ago by ▴ 120
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5
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pathway finding software
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16
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Normalised counts from RUVg in RUVSeq
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Error: 'IdClusters'
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updated 11 months ago by ▴ 10 • written 15 months ago by • 0
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457
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updated 11 weeks ago by 42k • written 7.9 years ago by ▴ 30
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
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updated 6 months ago by ▴ 50 • written 6 months ago by ▴ 30
1
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updated 8 weeks ago by ▴ 20 • written 6.6 years ago by ▴ 100
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11
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updated 3 months ago by ▴ 180 • written 7.1 years ago by ★ 2.0k
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updated 9 months ago by 65k • written 9 months ago by • 0
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10
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16
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error in ChAMP loading file
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updated 8 months ago by 50k • written 8 months ago by • 0
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Rsubread: subjunc() loads index repeatedly
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10 months ago • updated 9 months ago Gerhard Thallinger ▴ 180
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problem while retriving the genes by using p value and log2fc as conditions
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extract rsids of SNPs using their genomic positions
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10
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SGSeq: moving toward diffex from SGSeq analysis
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13
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Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
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updated 7 months ago by 42k • written 8 months ago by • 0
0
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7
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readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in docker
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11
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globaltest question
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44
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error with champ.load
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WGCNA documentation not available
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mailman bugs
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Archives prior to 3.15 gone
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LIMMA: plotMDS
updated 9 months ago by 50k • written 12.0 years ago by ▴ 180
1,000 results • Page 1 of 20
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Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Guido Hooiveld ★ 4.0k
FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…
Votes
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Answer: How to design DEXSeq formula for multiple variables
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