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499
views
Differential Gene Wrapper for Propotion of Detected
scran
18 months ago
Dario Strbenac
★ 1.6k
0
votes
9
replies
1.5k
views
Research Project - Expanding search funtionality on the GEO database
GEOquery
GEO
18 months ago
gallantk5
• 0
0
votes
0
replies
603
views
Filtering the genesets for fgseaMultiLevel
msigdb
fgsea
msig
19 months ago
Tanvi
• 0
0
votes
0
replies
820
views
ligand-receptor-interactions for bulk RNAseq in R
decoupleR
19 months ago
silvaesilva.da
• 0
0
votes
0
replies
661
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
19 months ago
Reese
• 0
0
votes
0
replies
505
views
Scoreplot for OPLS
splots
19 months ago
devarti.mahakalkar
• 0
0
votes
4
replies
1.3k
views
Single Cell Experiment : Differential Expression "List of length 0" - Help!
DifferentialExpression
scran
scater
SingleCellExperiment
edgeR
19 months ago
vohara4
• 0
0
votes
0
replies
528
views
Error in drawHeatmap function
GeneOverlap
heatmaps
19 months ago
Johanna
• 0
1
vote
4
replies
1.7k
views
error loading collectTRI regulon
decoupleR
OmnipathR
19 months ago
silvaesilva.da
• 0
0
votes
4
replies
2.5k
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 7 months ago by
Mancy
• 0 • written 19 months ago by
archibold.mposhi
• 0
0
votes
1
reply
844
views
When I tried to use the functions from the celldex package to fetch information, I encountered the following error. How can I resolve this?"
celldex
SingleR
updated 19 months ago by
ATpoint
★ 5.0k • written 19 months ago by
1319244258
• 0
0
votes
0
replies
493
views
Amplican doesn't recognize forward reads fast q file
amplican
19 months ago
landenshanie
▴ 40
0
votes
3
replies
922
views
STRINGdb server response time for mapping
mapping
serverresponsetime
STRINGdb
updated 19 months ago by
damian.szk
▴ 110 • written 19 months ago by
roberto.pellegrino
• 0
1
vote
3
replies
1.0k
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 19 months ago by
damian.szk
▴ 110 • written 19 months ago by
h.valipour.k
• 0
0
votes
0
replies
449
views
does TMixClust recognise biological replicates
TMixClust
19 months ago
ta_awwad
▴ 10
0
votes
0
replies
882
views
How to fix fix $PnR in flowCore
flowCore
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Elle
• 0
0
votes
0
replies
476
views
Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
ASpli
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Randall
• 0
0
votes
0
replies
533
views
EuroBioC2024 Registration is Open!
Community
Conference
Bioconductor
EuroBioC2024
19 months ago
Maria Doyle
▴ 110
0
votes
0
replies
460
views
Message 'invalid data format' on impute.MAR function
impute
19 months ago
marcosdossantosferreira
• 0
0
votes
1
reply
1.4k
views
scds creates sparse->dense coercion
scds
19 months ago • updated 17 months ago
Lluís Revilla Sancho
▴ 760
0
votes
0
replies
411
views
Import_picrust2 question
microbiomeMarker
19 months ago
Jay
• 0
0
votes
0
replies
488
views
gmapR source package contains x86_64 binaries
gmapR
19 months ago
Tom Lin
• 0
1
vote
2
replies
1.0k
views
conumee with Infinium MethylationEPIC v2.0
conumee
written 19 months ago by
Maximus
▴ 10
1
vote
9
replies
2.0k
views
Cannot install oligo on Fedora
oligo
source
Install
19 months ago
Guido Hooiveld
★ 4.1k
0
votes
6
replies
2.3k
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq
Rsubread
19 months ago
atan
• 0
0
votes
1
reply
883
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
19 months ago • updated 18 months ago
abhisek001
• 0
0
votes
0
replies
425
views
Conditional analysis
GENESIS
20 months ago
SuperDad
• 0
0
votes
0
replies
1.1k
views
FindOverlaps, makeVennDiagram and "others"
ATACSeq
peaks
ATAC
ChIPpeakAnno
20 months ago
Raghad
• 0
0
votes
0
replies
12
views
Spam:
Understanding Laser Hair Removal?
healthyControlsPresenceChecker
20 months ago
shahrozimmac
0
0
votes
0
replies
472
views
Processing of curatedmetagenomics
curatedMetagenomicData
20 months ago
Edward
• 0
0
votes
0
replies
675
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq
scRNAseq
20 months ago
Bibi
• 0
0
votes
0
replies
597
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
20 months ago
Abiologist
• 0
0
votes
3
replies
1.5k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 20 months ago by
damian.szk
▴ 110 • written 20 months ago by
ninidea
• 0
0
votes
0
replies
575
views
determine k during RUVSeq
RUVSeq
RUVnormalize
20 months ago
Ειρήνη
• 0
0
votes
1
reply
771
views
ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
updated 16 months ago by
jg
▴ 20 • written 20 months ago by
Shaimaa Gamal
• 0
0
votes
0
replies
16
views
Spam:
Unveiling Unmatched Best Custom Patches
SIMAT
20 months ago
oliverelijhan
0
0
votes
0
replies
573
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
20 months ago
Anton01
• 0
0
votes
0
replies
537
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
20 months ago
danalvoronov
▴ 10
0
votes
0
replies
563
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
20 months ago
k200987
• 0
0
votes
0
replies
550
views
Difference in Contrast in DiffBind
DiffBind
20 months ago
user_bioinfo
• 0
1
vote
2
replies
691
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 20 months ago by
Researcher
▴ 10
1
vote
2
replies
1.2k
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
20 months ago
BioinfGuru
▴ 70
0
votes
2
replies
709
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
20 months ago
Yveto
• 0
0
votes
7
replies
2.1k
views
ChAMP installation issue
Cha
ChAMP
updated 19 months ago by
James W. MacDonald
68k • written 20 months ago by
e1271094
• 0
0
votes
0
replies
371
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
20 months ago
neilzhao
▴ 30
2
votes
7
replies
2.1k
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
20 months ago
sajadahmad41454
• 0
0
votes
0
replies
386
views
Treeio as.treedata function seq lenght error
treeio
20 months ago
nromerov
• 0
0
votes
0
replies
546
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
20 months ago
Dinesh
• 0
0
votes
1
reply
1.1k
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 14 months ago by
B.N
• 0 • written 20 months ago by
Henry
▴ 10
0
votes
0
replies
445
views
flowStats for CyTOF
flowStats
20 months ago
tholmes
• 0
1,000 results • Page
5 of 20
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Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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