3
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1
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2.3k
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Difference between enrichGO results and Enrichr website results
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updated 18 months ago by ★ 4.1k • written 18 months ago by ▴ 10
0
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
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18 months ago JG13 • 0
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Blacklist regions on DBA object (diffbind)
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18 months ago gamma.jian ▴ 10
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Structural Variant Format Converted for BRASS Format
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18 months ago Dario Strbenac ★ 1.6k
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Differential Gene Wrapper for Propotion of Detected
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18 months ago Dario Strbenac ★ 1.6k
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9
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Research Project - Expanding search funtionality on the GEO database
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18 months ago gallantk5 • 0
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Filtering the genesets for fgseaMultiLevel
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19 months ago Tanvi • 0
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821
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ligand-receptor-interactions for bulk RNAseq in R
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19 months ago silvaesilva.da • 0
0
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0
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662
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BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
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19 months ago Reese • 0
0
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0
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510
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Scoreplot for OPLS
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19 months ago devarti.mahakalkar • 0
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4
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Single Cell Experiment : Differential Expression "List of length 0" - Help!
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19 months ago vohara4 • 0
0
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0
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Error in drawHeatmap function
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19 months ago Johanna • 0
1
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4
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error loading collectTRI regulon
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19 months ago silvaesilva.da • 0
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4
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Combining analysis of EPICv1 and EPICv2 using SeSAMe package
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updated 7 months ago by • 0 • written 19 months ago by • 0
0
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844
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When I tried to use the functions from the celldex package to fetch information, I encountered the following error. How can I resolve this?"
celldex SingleR
updated 19 months ago by ★ 5.0k • written 19 months ago by • 0
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494
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Amplican doesn't recognize forward reads fast q file
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19 months ago landenshanie ▴ 40
0
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3
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927
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STRINGdb server response time for mapping
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updated 19 months ago by ▴ 110 • written 19 months ago by • 0
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STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 19 months ago by ▴ 110 • written 19 months ago by • 0
0
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0
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does TMixClust recognise biological replicates
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19 months ago ta_awwad ▴ 10
0
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How to fix fix $PnR in flowCore
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updated 19 months ago by 68k • written 19 months ago by • 0
0
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Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
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updated 19 months ago by 68k • written 19 months ago by • 0
0
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0
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EuroBioC2024 Registration is Open!
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19 months ago Maria Doyle ▴ 110
0
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0
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463
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Message 'invalid data format' on impute.MAR function
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19 months ago marcosdossantosferreira • 0
0
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1.4k
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scds creates sparse->dense coercion
scds
19 months ago • updated 17 months ago Lluís Revilla Sancho ▴ 760
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0
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Import_picrust2 question
microbiomeMarker
19 months ago Jay • 0
0
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0
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488
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gmapR source package contains x86_64 binaries
gmapR
19 months ago Tom Lin • 0
1
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2
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conumee with Infinium MethylationEPIC v2.0
conumee
written 19 months ago by ▴ 10
1
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9
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Cannot install oligo on Fedora
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19 months ago Guido Hooiveld ★ 4.1k
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6
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Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
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20 months ago • updated 19 months ago atan • 0
0
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884
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Problem in execuation of filterAndTrim command in DADA2
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20 months ago • updated 18 months ago abhisek001 • 0
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Conditional analysis
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20 months ago SuperDad • 0
0
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0
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FindOverlaps, makeVennDiagram and "others"
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20 months ago Raghad • 0
0
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Spam: Understanding Laser Hair Removal?
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20 months ago shahrozimmac 0
0
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Processing of curatedmetagenomics
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20 months ago Edward • 0
0
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0
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scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
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20 months ago Bibi • 0
0
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0
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Minor allele data from grch38 giving NAs from getBM ?
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20 months ago Abiologist • 0
0
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3
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STRINGdb : error with string_db$plot_network()
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updated 20 months ago by ▴ 110 • written 20 months ago by • 0
0
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determine k during RUVSeq
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20 months ago Ειρήνη • 0
0
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1
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ReactomeGSA for RNASeq
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updated 16 months ago by ▴ 20 • written 20 months ago by • 0
0
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Spam: Unveiling Unmatched Best Custom Patches
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20 months ago oliverelijhan 0
0
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0
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20 months ago Anton01 • 0
0
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0
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20 months ago danalvoronov ▴ 10
0
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0
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query regarding how to apply WGCNA on replicates
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20 months ago k200987 • 0
0
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0
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552
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Difference in Contrast in DiffBind
DiffBind
20 months ago user_bioinfo • 0
1
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2
replies
697
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QSEA- Extraction of Normalized methylation across the samples
qsea ngsReports correlation
written 20 months ago by ▴ 10
1
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2
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1.2k
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
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20 months ago BioinfGuru ▴ 70
0
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2
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709
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Problem finding certain variables when importing a public database GSE73103
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20 months ago Yveto • 0
0
votes
7
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2.1k
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ChAMP installation issue
Cha ChAMP
updated 20 months ago by 68k • written 20 months ago by • 0
0
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0
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373
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Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
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20 months ago neilzhao ▴ 30
2
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7
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2.1k
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deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
20 months ago sajadahmad41454 • 0
1,000 results • Page 5 of 20
Recent ...
Replies
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
Awards • All
Commentator to James W. MacDonald 68k
Great Question to fl ▴ 20
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
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