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0
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0
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509
views
Are equal whisker lengths important in an RLE plot?
EDASeq
EDA
16 months ago
BioinfGuru
▴ 70
0
votes
2
replies
1.0k
views
DMPs enrichment for MOUSE DNA methylation array
minfi
mCSEA
missme
missMethyl
updated 16 months ago by
nrenke
• 0 • written 16 months ago by
Lucie
• 0
0
votes
2
replies
985
views
FlowSOM library requires igraph but igraph does not install
FlowSOM
updated 8 months ago by
Szabolcs
• 0 • written 16 months ago by
Priyanka
• 0
0
votes
0
replies
567
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
16 months ago
user_bioinfo
• 0
0
votes
1
reply
638
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
16 months ago
mdidish
▴ 10
0
votes
0
replies
541
views
DiffBind dba.plotprofile y-axis range
DiffBind
16 months ago
Tara
• 0
0
votes
0
replies
480
views
proActiv-promoter analysis
proActiv
Transcriptomics
16 months ago
wang.xiangyu
• 0
0
votes
3
replies
725
views
How to combine multiple lists of cytoframes/cytocq data objects into one
flowWorkspace
cytocq
updated 16 months ago by
SamGG
▴ 360 • written 16 months ago by
anders.tondell
▴ 30
0
votes
0
replies
573
views
EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community
Conference
Bioconductor
EuroBioC2024
16 months ago
Maria Doyle
▴ 110
0
votes
4
replies
1000
views
Failed to install geneLenDataBase
geneLenDataBase
ChAMP
updated 16 months ago by
shepherl
4.2k • written 16 months ago by
Fang
• 0
4
votes
4
replies
1.8k
views
NAs in fgseaMultilevel
fgsea
updated 16 months ago by
alserg
▴ 280 • written 16 months ago by
Danté
• 0
0
votes
8
replies
1.4k
views
DiffBind full library size not reliable
DiffBind
Reads
MACS2
FullLibSize
updated 16 months ago by
Rory Stark
★ 5.2k • written 16 months ago by
Marianna
▴ 20
0
votes
2
replies
1.8k
views
save.rnb.set warnings when trying to save rnb.set
RnBeads
RnBeads.hg19
MethylationArray
updated 6 months ago by
juansmurphy
• 0 • written 17 months ago by
hayleyw
• 0
0
votes
1
reply
711
views
Basic import of seqFISH from Spatial Genomics genePS into SpatialExperiment
seqFISH
SpatialExperiment
17 months ago • updated 16 months ago
Matthew Thornton
▴ 390
0
votes
3
replies
1.9k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 17 months ago by
Maryna
• 0 • written 2.3 years ago by
Michael
• 0
0
votes
0
replies
614
views
Sigmatrix should not contain missing values error in deconvolution using granule
granulator
17 months ago
louis.der.hammer
• 0
0
votes
0
replies
677
views
Error in serialization
scDblFinder
BiocParallel
17 months ago
Lluís Revilla Sancho
▴ 760
0
votes
1
reply
754
views
Retrieving Package Metadata from Bioconductor API: Versions and Dependencies
metaMSdata
updated 17 months ago by
shepherl
4.2k • written 17 months ago by
Sadman
• 0
0
votes
0
replies
674
views
Using variantAnnotation to put together genotype and consequence information
variantAnn
VariantAnnotation
17 months ago
ramiro.barrantes
▴ 10
0
votes
0
replies
467
views
ASICS to process NMR spectra
ASICS
17 months ago
KONG ZHI XIAN
• 0
0
votes
0
replies
552
views
MAST package: Most appropriate way to perform lrTest for effect of factor with multiple levels in pairwise manner?
MAST
17 months ago
Kelly
• 0
4
votes
9
replies
2.2k
views
Get_interactions is giving the combined score
STRINGdb
updated 17 months ago by
McKayl
• 0 • written 17 months ago by
nkavabhrath03
▴ 20
0
votes
0
replies
613
views
How to use GAGE with my own metagenomic KOFams data
kegg.gsets
gageData
gage
KEGG
17 months ago
cereyredondo
• 0
0
votes
1
reply
620
views
output from RAIN doesn't look rhythmic
rain
updated 17 months ago by
ATpoint
★ 5.0k • written 17 months ago by
cereyredondo
• 0
0
votes
0
replies
824
views
Linear Mixed Model for Differential Gene Expression in Single-Cell RNAseq with Batch Effects
lmer
MAST
DifferentialExpression
17 months ago
nhaus
▴ 70
3
votes
4
replies
1.3k
views
Differences in Limma and Dreamlet random effects from confounded dataset
limma
dreamlet
17 months ago
jcollier
• 0
0
votes
1
reply
954
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray
methylationArrayAnalysis
ChAMP
updated 13 months ago by
nereaherrera23
• 0 • written 17 months ago by
Mathu
• 0
1
vote
0
replies
626
views
RUVg spike-in assumption global expression
RUVSeq
RUVnormalize
17 months ago
Erdi
▴ 10
0
votes
0
replies
5
views
Spam:
Ground Handling Companies in Maldives
alabaster.schemas
db0
17 months ago
vvipflight01
0
0
votes
0
replies
11
views
Spam:
How do professional SEO services enhance user experience on my website?
metaMSdata
17 months ago
Steven
0
0
votes
0
replies
481
views
How to perform a methylation analyisis from beta values matrix and pd.csv
minfiDataEPIC
17 months ago
yemeijie123
• 0
0
votes
0
replies
435
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
17 months ago
StayM
• 0
0
votes
0
replies
41
views
Spam:
GenOMICC DNA biobank
alabaster.schemas
db0
17 months ago
Jolka
0
0
votes
0
replies
521
views
EPIC v2 annotation and BigWig
EPICv2manifest
IlluminaHumanMethylationEPICv2anno.20a1.hg38
17 months ago
MajaVu
• 0
0
votes
0
replies
761
views
Improving Gene Matching for CIBERSORT Deconvolution with Monaco Reference Matrix in Bulk RNA-Seq
DeconRNASeq
AnnotationDbi
org.Hs.eg.db
17 months ago
chunglee13
• 0
0
votes
4
replies
1.9k
views
Trouble Installing DADA2 (warning: R new user)
dada2
updated 17 months ago by
shepherl
4.2k • written 17 months ago by
schott01
• 0
0
votes
0
replies
755
views
Difference in Predictive component of PLS and OPLS Model
Metabolomics
plotGrouper
Bioconductor
ropls
PLSDAbatch
17 months ago
devarti.mahakalkar
• 0
0
votes
0
replies
741
views
Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi
EPICv2manifest
MethylAid
17 months ago
pcibin
• 0
0
votes
3
replies
985
views
Conumee with EPICv2 Segment function
Conu
conumee
updated 9 months ago by
zpingfeng
• 0 • written 18 months ago by
idatta1
• 0
0
votes
1
reply
714
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 17 months ago by
Basti
▴ 780 • written 18 months ago by
tahirah.yasmin2014
• 0
1
vote
2
replies
801
views
How to get the DMR?
ENmix
18 months ago • updated 17 months ago
Alex
• 0
0
votes
0
replies
410
views
Remove Control Probes from Affymetrix Human Gene 1.0 ST Array probeset version
AffymetrixDataTestFiles
AffymetrixChip
18 months ago
drexjaramel
• 0
0
votes
3
replies
1.0k
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata
Bioconductor
18 months ago
Abiologist
• 0
0
votes
0
replies
513
views
Understanding Differentially Abundant Neighbourhood Identification
miloR
18 months ago
Dario Strbenac
★ 1.6k
0
votes
2
replies
1.2k
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
18 months ago • updated 15 months ago
abhisek001
• 0
3
votes
1
reply
2.2k
views
Difference between enrichGO results and Enrichr website results
Pathways
GO.db
clusterProfiler
updated 18 months ago by
Guido Hooiveld
★ 4.1k • written 18 months ago by
adrip
▴ 10
0
votes
0
replies
734
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution
rnaseqGene
RNAseq
18 months ago
JG13
• 0
0
votes
0
replies
829
views
Blacklist regions on DBA object (diffbind)
DiffBind
chipseq
18 months ago
gamma.jian
▴ 10
0
votes
0
replies
482
views
Structural Variant Format Converted for BRASS Format
StructuralVariantAnnotation
18 months ago
Dario Strbenac
★ 1.6k
0
votes
0
replies
486
views
Differential Gene Wrapper for Propotion of Detected
scran
18 months ago
Dario Strbenac
★ 1.6k
1,000 results • Page
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Comment: Bioinformatician at the Lausanne University Hospital
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TikTsokaasocissalpc
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The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
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If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
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I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
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ATpoint
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WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
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victor04052024
• 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
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