Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
9
replies
1.9k
views
RforProteomics workflow troubleshooting
proteomics
7.9 years ago
yockpingchow
• 0
2
votes
9
replies
2.1k
views
STRINGdb images very low quality?
STRINGdb
updated 2.4 years ago by
damian.szk
▴ 80 • written 2.5 years ago by
jarod
▴ 30
3
votes
9
replies
2.3k
views
problem for finding soft thresholding in WGCNA algorithm
wgcna
abline function
Scale independence diagram
5.6 years ago
modarzi
▴ 10
0
votes
9
replies
3.0k
views
Error 'names' attribute must be the same length as the vector xcms
xcms
xcms3
mzxml
5.8 years ago
goh
• 0
7
votes
9
replies
1.7k
views
codelink package is not installing
codelink
r
9.1 years ago
Agaz Hussain Wani
▴ 260
1
vote
9
replies
2.5k
views
errors in namespaceExports during biocLite installs
biocinstaller
installation
9.1 years ago
shabbychef
• 0
1
vote
9
replies
3.0k
views
Dotplots for differential gene expression data ?
clusterprofiler
3.9 years ago
sunnykevin97
• 0
0
votes
9
replies
1.4k
views
AnnotationHub: failed to load resource name
DFP
2.9 years ago
hxwanghxw
• 0
0
votes
9
replies
3.0k
views
clusterProfiler-GO enrichment Error
Aaltissimus
updated 2.1 years ago by
Guido Hooiveld
★ 4.0k • written 2.2 years ago by
SongW
• 0
2
votes
9
replies
7.6k
views
Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
deseq
deseq2
edger
tophat
bowtie
9.0 years ago
ysdel
▴ 40
1
vote
9
replies
2.5k
views
Handling DNA sequence loaded from a file
r
biostrings
DNAsequence
updated 23 months ago by
James W. MacDonald
66k • written 8.1 years ago by
Agaz Hussain Wani
▴ 260
1
vote
9
replies
2.5k
views
Removing batch effects from microarray data based on only a subset of samples
limma
removebatcheffect()
ComBat
microarray
6.3 years ago
jaro.slamecka
▴ 140
0
votes
9
replies
2.6k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread
alignment
align
5.5 years ago
A
▴ 40
0
votes
8
replies
2.1k
views
DEXSeqHTML Output Trouble
dexseq
dexseqhtml
8.2 years ago
skasowitz
• 0
0
votes
8
replies
3.4k
views
featureCounts Returns 0.0% successfully assigned fragments
rsubread
featurecounts
6.0 years ago
connor.geraghty
• 0
0
votes
8
replies
1.2k
views
Question on bgzf_read error
diffbind
4.5 years ago
Kath
• 0
2
votes
8
replies
2.4k
views
Reading HDF5 Files In The Cloud
Rhdf5lib
rhdf5
3.3 years ago • updated 9 months ago
Thomas Sandmann
▴ 90
0
votes
8
replies
1.6k
views
DropletUtils::read10xCounts error
read10xCounts
DropletUtils
16 months ago
fdumetz
• 0
1
vote
8
replies
3.3k
views
Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't have a valid EOF block.
Rsubread
2.6 years ago
v.merino.nicolas
▴ 10
0
votes
8
replies
2.6k
views
Usecase_AnnotationHub_GRanges.Rmd, genes = qhs[[1]] can't download UCSC 'refGene'. - Window 7, R 3.2.1, RStudio 0.99.484
annotationhub
bioconductor for genomic data science
8.7 years ago
J.C. SUN
• 0
0
votes
8
replies
1.6k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.3 years ago
alipka
▴ 10
2
votes
8
replies
4.9k
views
GDCquery_Maf error
TCGAbiolinks
GDCquery_Maf
updated 22 months ago by
1526466763
• 0 • written 2.2 years ago by
e.iich
• 0
2
votes
8
replies
1.7k
views
lpsymphony install on Ubuntu
lpsymphony
7.3 years ago
Michael Love
42k
1
vote
8
replies
1.2k
views
Can't install 'pqsfinder'
pqsfinder
5.3 years ago
aabarnes2
• 0
0
votes
8
replies
430
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 4 weeks ago by
swbarnes2
★ 1.4k • written 5 weeks ago by
Aaliya
• 0
0
votes
8
replies
1.9k
views
Error, could not find function"file.edit", the install problem
illuminaHumanv2.db
4.9 years ago
JXG1819
• 0
2
votes
8
replies
951
views
Reason for NA in table after beta regression?
biseq
beta regression
3.9 years ago
akhaira
• 0
2
votes
8
replies
2.6k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.1 years ago by
Martin Morgan
25k • written 2.1 years ago by
ZheFrench
▴ 60
2
votes
8
replies
1.7k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis
pcair
6.1 years ago
GENOMIC_region
• 0
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics
RnBeads
R
2.2 years ago
Jitendra
▴ 10
7
votes
8
replies
3.8k
views
R failing to load genome files from EnsDb.Hsapiens.v86
tximport
ensembldb
EnsDB.hsapiens.v86
updated 5.4 years ago by
Bioconductor Community
0 • written 5.5 years ago by
michaelschoeber
▴ 20
10
votes
8
replies
3.0k
views
Best alternative annotation package to BiomaRt
R
biomaRt
Ensembl
rnaseq
4.9 years ago
m93
▴ 10
0
votes
8
replies
1.2k
views
Question about Diffbind counts
DiffBind
16 months ago
slrpatty
• 0
3
votes
8
replies
1.4k
views
please someone help me to run this code
software error
R
8.4 years ago
Angel
▴ 40
1
vote
8
replies
2.3k
views
ReactomePA gsePathway - a couple of questions regarding the input and output
reactomepa
7.2 years ago
juls
• 0
2
votes
8
replies
2.0k
views
Error: se does not inherit from class SummarizedExperiment
DEP
SummarizedExperiment
4.8 years ago
Wuschel
▴ 10
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
8.5 years ago
svlachavas
▴ 830
3
votes
8
replies
2.6k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
2.1 years ago
Saber_J
▴ 10
0
votes
8
replies
1.2k
views
Failed to read SDRF
software error
arrayexpressHTS
4.2 years ago
Ed Siefker
▴ 230
0
votes
7
replies
2.3k
views
makeTxDbFromGFF yields an empty TxDb
annotation
maketxdbfromgff
genomicfeatures
8.6 years ago
José Luis Lavín
▴ 10
0
votes
7
replies
1.9k
views
GO.db installation problems with BiocManager in R
R
Bioconductor
5.2 years ago
d.m.j.thorburn
• 0
1
vote
7
replies
1.9k
views
Error using champ.import
ChAMP
EPICv2
updated 5 weeks ago by
shilpa
• 0 • written 11 months ago by
medha.suman
• 0
8
votes
7
replies
1.3k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 6 months ago by
Daniel E. Weeks
▴ 30
0
votes
7
replies
1.9k
views
Problem with fgsea
fgsea
updated 2.2 years ago by
alserg
▴ 260 • written 2.2 years ago by
Barista
• 0
1
vote
7
replies
1.5k
views
query regarding error in installation of "goseq" R bioconductor package
R
Bioconductor
Install
updated 18 months ago by
shepherl
3.9k • written 18 months ago by
abhisek001
• 0
1
vote
7
replies
2.6k
views
bplapply() fails when BPPARAM = SnowParam() is specified
biocparallel
9.6 years ago
jessica.hekman
▴ 40
0
votes
7
replies
1.9k
views
Error in loading rsbml
rsbml
BiGGR
8.0 years ago
enrico.moiso
• 0
2
votes
7
replies
2.7k
views
DESeq(): Forking of R Process even though parallel=FALSE
DESeq2
biocparallel
updated 7.7 years ago by
Michael Love
42k • written 7.7 years ago by
frank.staemmler
• 0
0
votes
7
replies
3.2k
views
Mouse GSEA Analysis
clusterProfiler
updated 18 months ago by
Michael Love
42k • written 18 months ago by
Rob
• 0
0
votes
7
replies
1.7k
views
Cannot call biomaRt library.
installationofbioconductor
biomaRt
3.4 years ago
dolivenca3
• 0
1,000 results • Page
2 of 20
Recent ...
Replies
Answer: Counter-directional LFC shrinkage
by
swbarnes2
★ 1.4k
The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
shepherl
3.9k
Popular Question
to
Robert Castelo
★ 3.3k
Popular Question
to
kevin.rue
▴ 350
Popular Question
to
Wei Shi
★ 3.6k
Locations
• All
Germany,
12 minutes ago
Poland,
14 minutes ago
Germany,
15 minutes ago
France,
17 minutes ago
Vietnam,
21 minutes ago
Traffic: 666 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6