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Votes
0
votes
0
replies
669
views
Re: SAM: Significance of Microarray Analysis availability
Microarray
Microarray
21.2 years ago
Nicholas Lewin-Koh
▴ 430
0
votes
1
reply
875
views
Error in installation of Bioconductor package
bioconductor
6.3 years ago
wangwangy2012
• 0
0
votes
0
replies
829
views
peer review of packages, update
22.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
671
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
2.1 years ago
hasche
• 0
0
votes
0
replies
796
views
display of synteny regions across multiple species
synteny
translocation
evolution
conservation
5.8 years ago
Bogdan
▴ 670
0
votes
0
replies
1.2k
views
Need help determine optimal argument value on a rbsurv model
rbsurv
microarray
survival
6.6 years ago
JackieMe
• 0
0
votes
0
replies
827
views
How to obtain log2 intensity per sample in DEP?
DEP
2.9 years ago
hele7
▴ 20
0
votes
0
replies
1.7k
views
Job offers at Novartis, Basel and Cambridge (MA)
9.9 years ago
Kauffmann, Audrey
▴ 60
0
votes
0
replies
1.1k
views
Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
GSVA
geneset
RNASeq
TCGA
subtypes
5.4 years ago
Pietro
▴ 40
2
votes
1
reply
1.3k
views
HTqPCR- gene names not maintained in limmaCtData
annotate
ddCt
HTqPCR
annotate
ddCt
HTqPCR
10.2 years ago
Cornwell, Adam
▴ 110
0
votes
0
replies
340
views
unable to compute MAD in aCGH package
18.6 years ago
Sze_Sing_LEE/DMO/NCC@nccs.com.sg
▴ 10
0
votes
0
replies
449
views
Free Gibbson energy RNA doublex
GeneExpression
RNAinteract
21 months ago
Tamina
• 0
0
votes
0
replies
621
views
(no subject)
RMAGEML
SJava
RMAGEML
SJava
19.3 years ago
Steffen Durinck
▴ 420
0
votes
0
replies
792
views
LIMMA Error Message:Error in new("AnnotatedDataFrame", data = phenotypicdata) : trying to generate an object from a virtual class ("AnnotatedDataFram…
Cancer
limma
Cancer
limma
15.3 years ago
Martin Morgan
25k
0
votes
0
replies
866
views
FIESTA viewer: another issue with input files (corrected)
16.5 years ago
Juan C Oliveros Collazos
▴ 40
0
votes
0
replies
621
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.9 years ago
koushik
• 0
0
votes
0
replies
851
views
Error in mRNAselected_values_ordered[1:(lastelementTOP - 1)]
tcgabiolinks
TCGA
survival analysis
6.7 years ago
lqfuture
• 0
0
votes
0
replies
522
views
Error when reading qPCR data in SDS format
HTqPCR
3.1 years ago
Nghia
• 0
0
votes
0
replies
804
views
MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization
probe
affycomp
plier
Normalization
probe
affycomp
plier
19.3 years ago
Ariel Chernomoretz
▴ 380
0
votes
0
replies
605
views
ratios in SAM analysis
19.2 years ago
Flora Fan
▴ 30
0
votes
0
replies
965
views
Problem using KEGGSOAP: multiple genes per identity
Pathways
KEGGSOAP
Pathways
KEGGSOAP
12.3 years ago
January Weiner
▴ 240
0
votes
0
replies
416
views
A relevant petition
10.3 years ago
Guest User
★ 13k
3
votes
2
replies
1.2k
views
DEXSeq analysis with large number of samples
dexseq
estimatedispersions
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
nemanja.vucic
▴ 10
0
votes
0
replies
835
views
ChIPpeakAnno, callEnrichedRegions results have "holes"
Yeast
Yeast
11.7 years ago
Susan Wilson
▴ 50
0
votes
0
replies
865
views
select samples for qPCR
qpcr
sample
8.7 years ago
Frederico Moraes Ferreira
▴ 100
0
votes
0
replies
204
views
Problem with ABarray package
17.3 years ago
Yongming A Sun
▴ 10
0
votes
0
replies
863
views
SamBit input data error
BitSeq
BitSeq
11.5 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.2k
views
Gviz pacakge
Annotation
Gviz
Annotation
Gviz
10.3 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
5
replies
1.9k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
20 months ago
Sam
▴ 10
2
votes
2
replies
2.4k
views
ChIP seeker annotation error
DiffBind
chipseq
ChIPseeker
ChipDb
annotation
3.5 years ago • updated 3.3 years ago
Mar Mar
▴ 20
0
votes
2
replies
868
views
Pulling Genbank Annotation Information via library(genbankr)
genbankr
genbank
annotation
5.8 years ago
story.benjamin
▴ 20
1
vote
2
replies
1.1k
views
How to transform edgeR output into a cummeRbund object?
edgeR
cummeRbund
7.1 years ago
alakatos
▴ 130
0
votes
0
replies
811
views
Questions about multtest
14.8 years ago
Anqi
▴ 40
0
votes
0
replies
736
views
Hapmap miRNA expression data
miRNA
HapMap
ArrayExpress
miRNA
HapMap
ArrayExpress
14.4 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
789
views
R script to fix the error in dataframe when using ballgown for differentially expression analysis
r
ballgown
code error
5.6 years ago
amy16
• 0
3
votes
6
replies
1.6k
views
ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq
chippeakanno
chipseeker
5.8 years ago
94133
• 0
0
votes
0
replies
1.6k
views
ATAC-seq: Sample size when pooling sample reads to call peaks
atac-seq
sample size
Peak
Normalize
6.3 years ago
jaime.alvarez.benayas
• 0
0
votes
0
replies
622
views
Obtaining values like those from .exp files
Microarray
affy
simpleaffy
Microarray
affy
simpleaffy
18.2 years ago
Ruppert Valentino
▴ 270
0
votes
0
replies
1.1k
views
missing value where TRUE/FALSE needed (metaArray)
metaArray
metaArray
13.5 years ago
Reema Singh
▴ 570
0
votes
1
reply
3.6k
views
cannot : source("https://bioconductor.org/biocLite.R")
software error
7.4 years ago
kc9qey
• 0
0
votes
0
replies
660
views
Loess normalization at the probe set level ... how to?
Normalization
Normalization
18.9 years ago
Emmanuel Levy
▴ 270
0
votes
0
replies
1.1k
views
Problems installing cghFLasso
15.9 years ago
Ng Stanley
▴ 230
0
votes
0
replies
650
views
Dynamic Function creation
13.2 years ago
drambald
▴ 80
0
votes
0
replies
616
views
[LIMMA] change in normexp function between limma 2.2.0 to limma 2.4.4
Microarray
limma
Microarray
limma
18.4 years ago
Ron Ophir
▴ 270
1
vote
5
replies
2.3k
views
error while using champ.svd() function
champ
5.4 years ago
sinha.puja
▴ 10
0
votes
0
replies
582
views
affy pack problem
affy
affy
20.5 years ago
Phguardiol@aol.com
▴ 720
0
votes
0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
7.4 years ago
carleshf
▴ 10
0
votes
0
replies
1.0k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
6.3 years ago
aokoro
• 0
0
votes
0
replies
557
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs (fwd)
18.0 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
751
views
combined Affybatch and mas5
hgu133a
cdf
affy
matchprobes
hgu133a
cdf
affy
matchprobes
17.9 years ago
Lewin Eisele
▴ 10
1,000 results • Page
2 of 20
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
jane
• 0
Your material was totally correct, therefore I was able to learn what I needed to know. I'd want to convey my heartfelt gratitude for shari…
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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euge.eugenio
▴ 20
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to
Dario Strbenac
★ 1.5k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
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to
Koen Van den Berge
▴ 180
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to
shepherl
3.9k
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