0
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1
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3.7k
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ape - delete bootstrap values (node.labels) less than a certain value
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8.9 years ago wd ▴ 30
0
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3
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Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
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2.0 years ago Olivia • 0
1
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4
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Issue with qvalue function: Error in smooth.spline(lambda, pi0, df = smooth.df) : missing or infinite values in inputs are not allowed
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4.6 years ago anamaria ▴ 10
0
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1
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3.6k
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getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
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8.2 years ago maedakus ▴ 10
0
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2
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3.6k
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Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
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1
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3.6k
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cannot : source("https://bioconductor.org/biocLite.R")
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7.4 years ago kc9qey • 0
3
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11
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The low successful assignment ratio of FeatureCounts
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rhdf5::h5dump requires write access
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9.6 years ago friedmab ▴ 10
1
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2
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ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file.
featureCounts
4.1 years ago chatterjee.arumoy ▴ 10
0
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0
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Inquiries about fitType on DESeq2
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10.5 years ago Michael Love 42k
0
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2
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3.6k
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Error in UseMethod("rescale")
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updated 17 months ago by ★ 3.9k • written 17 months ago by • 0
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2
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R Version 3.6.1
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2
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1
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RNA-seq Differential expression using 3 groups
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8.8 years ago BM • 0
1
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1
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Normalization/Transformation Before Microbiome Alpha Diversity Analysis
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7.1 years ago stats134711 • 0
1
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4
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Looking for Batch effects in PCA
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2
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minfi::read.metharray.exp error ("The following specified files do not exist")
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7.6 years ago • updated 7.5 years ago supermanrocketboy ▴ 10
0
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1
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3.4k
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"Package which is only available in source form, and may need compilation of C/C++/Fortran"
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6.8 years ago milenamagalhaes • 0
0
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0
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3.4k
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maQualityPlots: cannot coerce type 'S4' to vector of type 'double'
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10.3 years ago Saket Choudhary ▴ 130
4
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2
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Difference between "be" and "leek" methods when deciding number of surrogate variables to estimate with SVA?
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6.9 years ago brhead ▴ 40
0
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2
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DEXSeq on FeatureCounts output
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8.7 years ago Vivek.b ▴ 100
0
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0
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ComBat_ Error in solve.default(t(design) %*% design): Lapack routine dgesv: system is exactly singular: U[4, 4] = 0
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10.1 years ago Guan ▴ 20
0
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3
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Unable to reroot RAxML tree with ggtree
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6.3 years ago kevin.liam.keegan • 0
2
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2
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problem using AnnotationDbi
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6.3 years ago h72ghorashi • 0
0
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0
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3.4k
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Secure Account Update
15.5 years ago Abbey National Plc. ▴ 10
0
votes
6
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3.4k
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Merge problems in R
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2.8 years ago FWNL15 • 0
1
vote
4
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3.4k
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GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible differential exon splicing events
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9.2 years ago svlachavas ▴ 830
0
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3
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3.4k
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ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
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updated 7 months ago by • 0 • written 19 months ago by • 0
0
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0
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3.4k
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Affymetrix HTA 2 array analysis
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10.3 years ago Elena Serrano ▴ 30
0
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0
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Retrieving genes by their genome locations in biomart
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16.1 years ago Steffen ▴ 500
0
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0
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LIMMA - No residual degrees of freedom in linear model fits
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19.0 years ago Gordon Smyth 50k
0
votes
4
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3.3k
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[Solved]Preserve metadata column for retrieving common regions from two GRanges objects
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8.2 years ago Jurat Shahidin ▴ 80
0
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8
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featureCounts Returns 0.0% successfully assigned fragments
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5.9 years ago connor.geraghty • 0
0
votes
0
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3.3k
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
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11.2 years ago Julie Zhu ★ 4.3k
0
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0
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Error: : Error in dim(data) <- dim : attempt to set an attribute on NULL
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15.3 years ago Sally ▴ 250
0
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1
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3.3k
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an error in ggbio: "Breaks and labels are different lengths"
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7.1 years ago Bogdan ▴ 670
0
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2
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3.3k
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KEGG Pathway in R
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updated 23 months ago by ★ 3.9k • written 23 months ago by • 0
1
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0
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3.3k
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Calculating average expression value in limma topTable output
probe probe
13.5 years ago Sunny Srivastava ▴ 350
3
votes
3
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3.3k
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Modifying or writing a FCS file in R using the FlowCore package
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5.7 years ago vonskopnik ▴ 10
0
votes
2
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3.3k
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CPM function in EDGER
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3.7 years ago francesca3 • 0
2
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4
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3.3k
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I want to make a geneList for clusterProfiler analysis but I get "error in do.call( cbind lapply(x is.na )) variable names are limited to 10000 bytes"
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3.4 years ago Emilia ▴ 30
0
votes
2
replies
3.3k
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Pipeline for analyzing CNV (SNP array) level 3 from TCGA
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9.0 years ago NS ▴ 60
0
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1
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3.3k
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Error: vector memory exhausted (limit reached?)
software error
5.9 years ago mdroog • 0
0
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0
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3.3k
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Urgent..........Problem in using ABarray
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14.8 years ago Priyanka Jain ▴ 20
0
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0
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lumi export
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14.6 years ago Mervi Alanne ▴ 70
0
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3
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How to count barcode sequences in a fastq file
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updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by ▴ 30
1
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8
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3.2k
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Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't have a valid EOF block.
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2.5 years ago v.merino.nicolas ▴ 10
0
votes
0
replies
3.2k
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edgeR: Specifying the "coef"-argument in glmLRT in a two factor study
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12.1 years ago Gordon Smyth 50k
0
votes
0
replies
3.2k
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Pathview+GAGE workflow on RNA-seq data pathway analysis and visualization (was: Pathview published in Bioinformatics)
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10.8 years ago Luo Weijun ★ 1.6k
3
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3
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Problem installing rhdf5
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6.6 years ago jariani.abb ▴ 10
0
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0
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3.1k
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Bioconductor 2.11 is released
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11.6 years ago Dan Tenenbaum ★ 8.2k
1,000 results • Page 3 of 20
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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ziliang • 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont by Denis • 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results by sajadahmad41454 • 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
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