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Annotationhub
•
reset
0
votes
4
replies
2.3k
views
AnnotationHub Error HTTP status was '500 Internal Server Error'
annotationhub
software error
8.6 years ago
ness
• 0
5
votes
11
replies
2.7k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 7.6 years ago by
Levi Waldron
★ 1.1k • written 7.6 years ago by
morganx
▴ 10
10
votes
41
replies
6.5k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 9 weeks ago by
Daniele
• 0 • written 5.7 years ago by
Guido Hooiveld
★ 4.0k
0
votes
5
replies
502
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 4 weeks ago by
shepherl
3.9k • written 5 weeks ago by
Mishaal Irfan
• 0
7
votes
11
replies
6.5k
views
Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.probes
edgeR
limma
annotationhub
kegga
annotationdbi
updated 8.1 years ago by
cagenet34
▴ 20 • written 8.4 years ago by
Rinaldo Bertossa
▴ 20
11
votes
13
replies
4.5k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic
AnnotationHub
GenomicRanges
org.Hs.eg.db
3.7 years ago • updated 3.5 years ago
rohitsatyam102
▴ 20
9
votes
14
replies
6.6k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 9 days ago by
shepherl
3.9k • written 2.5 years ago by
jon.klonowski
▴ 40
3
votes
9
replies
4.1k
views
AnnotationHub corrupt database
annotationhub
updated 5.4 years ago by
shepherl
3.9k • written 9.0 years ago by
Koen Van den Berge
▴ 180
1
vote
5
replies
1.8k
views
AnnotationHub; Error: failed to load resource; Timeout was reached: [annotationhub.bioconductor.org]
annotationhub
updated 4.3 years ago by
shepherl
3.9k • written 4.3 years ago by
dilaik
• 0
2
votes
12
replies
2.5k
views
AnnotationHub-cant extract database
annotationhub
updated 7.3 years ago by
Valerie Obenchain
★ 6.8k • written 7.3 years ago by
ecpierce
• 0
4
votes
6
replies
2.5k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub
OrganismDbi
org.Hs.eg.db
updated 2.4 years ago by
Gordon Smyth
51k • written 2.4 years ago by
Nathan
• 0
4
votes
3
replies
2.0k
views
Error installing AnnotationHub on Fedora
Annotationhub
curl
httr
fedora
updated 8.2 years ago by
anastazie.d
▴ 30 • written 8.9 years ago by
barashe
▴ 10
0
votes
5
replies
1.4k
views
AnnotationHub() returns only one record !?
annotationhub
updated 8.4 years ago by
Valerie Obenchain
★ 6.8k • written 8.4 years ago by
jean.monlong
• 0
1
vote
3
replies
1.1k
views
Problem with AnnotationHub after crash during first download of metadata
AnnotationHub
updated 4.9 years ago by
shepherl
3.9k • written 4.9 years ago by
konstantinos.bogias
▴ 10
0
votes
14
replies
5.1k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub
AnnotationDbi
AnnotationForge
pathview
7.5 years ago • updated 23 months ago
Jenny Drnevich
★ 2.0k
1
vote
6
replies
3.7k
views
failed to load 'AnnotationHub' resource
annotationhub
annotation
error
8.6 years ago
elhananby
▴ 10
0
votes
2
replies
1.0k
views
AnnotationHub downloading dataset fail
annotationhub
download_error
updated 6.9 years ago by
James W. MacDonald
66k • written 6.9 years ago by
vitay.dora
• 0
2
votes
12
replies
3.3k
views
Error: failed to load 'AnnotationHub' resource
biomart
annotationhub
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
borowczak.marc
▴ 10
0
votes
6
replies
519
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 3 months ago by
Tim Peters
▴ 190 • written 3 months ago by
s.malik
• 0
1
vote
7
replies
1.5k
views
mismatch between AnnotationHub ensembl v71 hsapiens and direct download using rtracklayer
annotationhub
updated 7.5 years ago by
Valerie Obenchain
★ 6.8k • written 7.5 years ago by
mviterson
▴ 10
0
votes
3
replies
1.2k
views
"quiet" mode for AnnotationHub?
AnnotationHub
7.6 years ago
Robert K. Bradley
▴ 40
0
votes
3
replies
1.4k
views
RefNet: source/data preparation used for Gerstein et al (2012) human TF data?
refnet
annotationhub
updated 9.1 years ago by
pshannon
▴ 100 • written 9.2 years ago by
Keith Hughitt
▴ 180
2
votes
28
replies
4.9k
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub
AnnotationForge
Pseudomonas_aeruginosa
updated 8 months ago by
James W. MacDonald
66k • written 19 months ago by
Manmohit
▴ 10
3
votes
6
replies
2.5k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub
OrgDb
snapshotDate
updated 2.0 years ago by
shepherl
3.9k • written 4.2 years ago by
Jenny Drnevich
★ 2.0k
2
votes
6
replies
1.6k
views
R getting "stuck" with RoadMap resource retrieval through AnnotationHub
roadmap project
annotationhub
7.2 years ago
vanesa_1230
• 0
7
votes
44
replies
5.9k
views
OrgDB download failed via AnnotationHub
annotationhub
orgdb
updated 5.1 years ago by
shepherl
3.9k • written 5.1 years ago by
chirag.parsania
▴ 10
9
votes
21
replies
15k
views
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub
dplyr
updated 24 months ago by
SmallChess
▴ 10 • written 3.7 years ago by
georgia.katsoula
▴ 40
6
votes
12
replies
5.9k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
9 months ago • updated 3 months ago
shepherl
3.9k
2
votes
2
replies
2.0k
views
Normal Patient Samples from GSE62944
GSE62944
annotationhub
differentialexpression
updated 8.3 years ago by
Sonali Arora
▴ 390 • written 8.3 years ago by
hamda.binte.ajmal
• 0
3
votes
3
replies
1.5k
views
Broken AnnotationHub resource (AH25517 | wgEncodeOpenChromDnaseGm12878Pk.narrowPeak.gz)
annotationhub
encode
updated 8.3 years ago by
Valerie Obenchain
★ 6.8k • written 8.4 years ago by
Peter Hickey
▴ 740
1
vote
3
replies
3.7k
views
Problem using display() function on RStudio
display
rstudio
annotationhub
updated 8.9 years ago by
James W. MacDonald
66k • written 8.9 years ago by
barashe
▴ 10
0
votes
1
reply
1.1k
views
AnnotationHub snapshotDate() behavior in Bioconductor 3.1
AnnotationHub
updated 9.3 years ago by
Marc Carlson
★ 7.2k • written 9.3 years ago by
jbyars
• 0
0
votes
1
reply
1.4k
views
News:
OrgDbs in AnnotationHub
annotationhub
orgdb
News
6.7 years ago
shepherl
3.9k
3
votes
13
replies
2.8k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub
organismdb
orgdb
unsupported organisms
updated 8.5 years ago by
Valerie Obenchain
★ 6.8k • written 8.5 years ago by
Guido Hooiveld
★ 4.0k
0
votes
1
reply
1.4k
views
querying annotation hub for common TF, in common cell line returns no results....
annotate
annotationhub
updated 6.9 years ago by
shepherl
3.9k • written 6.9 years ago by
chrisclarkson100
▴ 50
2
votes
8
replies
1.8k
views
Problem fetching resources from AnnotationHub, error 403
AnnotationHub
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
Johannes Rainer
★ 2.1k
4
votes
10
replies
1.3k
views
Suggestion: spinning wheel for AnnotationHub
annotationhub
updated 6.9 years ago by
shepherl
3.9k • written 6.9 years ago by
Michael Love
42k
0
votes
2
replies
877
views
Trouble loading Roadmap data from AnnotationHub
annotationhub
updated 6.8 years ago by
shepherl
3.9k • written 6.8 years ago by
bletteb18
• 0
0
votes
6
replies
1.3k
views
initialization of AnnotationHub() in version 2.12.0 is problematically verbose
AnnotationHub
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Robert K. Bradley
▴ 40
1
vote
6
replies
2.4k
views
Problem with AnnotationHub()
annotationhub
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.6 years ago by
rex.burger
▴ 10
0
votes
5
replies
1.9k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub
orgdb
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
efoss
▴ 10
0
votes
1
reply
2.0k
views
Map siRNA-Sequence to Gene
sequence
annotationhub
biostrings
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
antje.janosch
• 0
5
votes
2
replies
1.4k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.6 years ago
wcstcyx
▴ 30
0
votes
1
reply
1.7k
views
Additions to AnnotationHub (for example, CpG islands for hg38 and mm10)
annotationhub
updated 7.7 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
rcavalca
▴ 140
1
vote
4
replies
1.2k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
Johannes Rainer
★ 2.1k
0
votes
2
replies
1.8k
views
bad restore file magic number with AnnotationHub
annotationhub
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
jason.serviss
• 0
0
votes
4
replies
1.2k
views
error with downloading AnnotationHub item AH134
AnnotationHub
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.8 years ago by
Robert K. Bradley
▴ 40
1
vote
1
reply
1.0k
views
GRASP2 truncated phenotype descriptions
grasp2
grasp2db
annotationhub
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
gokcen.eraslan
▴ 10
0
votes
2
replies
1.4k
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 4.0 years ago by
James W. MacDonald
66k • written 4.0 years ago by
Jenny Drnevich
★ 2.0k
3
votes
2
replies
1.7k
views
AnnotationHub: A RPKM data.frame of Epigenomics RoadMap Project seems strange
annotationhub
roadmap project
rpkm
data.frame
7.8 years ago
wcstcyx
▴ 30
50 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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