Showing : BioMart • reset
21
votes
34
replies
4.9k
views
Biomart error when updating to R 4.0.2
Biomart
updated 19 months ago by ★ 5.5k • written 19 months ago by ▴ 40
21
votes
24
replies
10.0k
views
Problem with biomart's listMarts function
biomart bug
updated 6.0 years ago by ▴ 470 • written 6.5 years ago by ★ 1.9k
5
votes
19
replies
5.9k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
7.6 years ago k.askland ▴ 20
6
votes
18
replies
2.3k
views
biomaRt - getBM - biomart= ENSEMBL_MART_FUNCGEN !!! NOT WORKING!!!
bioconductor biomart problem with connection
updated 5.9 years ago by ▴ 70 • written 5.9 years ago by ▴ 10
4
votes
17
replies
997
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 20 months ago by 3.5k • written 20 months ago by ▴ 10
5
votes
16
replies
2.4k
views
biomaRt error in getBM for hsapiens_gene_ensembl
biomart
updated 4.4 years ago by • 0 • written 4.4 years ago by ▴ 20
0
votes
15
replies
1.3k
views
Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 12.4 years ago by ▴ 500 • written 12.4 years ago by ▴ 220
3
votes
14
replies
2.6k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart error ensembl bioconductor ensembl mart
5.0 years ago • updated 4.9 years ago daniel.carbajo • 0
21
votes
14
replies
1.2k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 11 days ago by • 0 • written 5 weeks ago by ▴ 50
0
votes
14
replies
577
views
Error while opening Mart with biomaRt package
software error ensembl biomart
2.4 years ago loicborcard01 • 0
2
votes
14
replies
2.8k
views
Unimart not available in 2015?
biomart uniprot unimart
6.5 years ago john ▴ 10
2
votes
13
replies
1.8k
views
Getting R to talk to BioMart using biomaRt
biomart
updated 3.6 years ago by 59k • written 3.6 years ago by ▴ 10
3
votes
13
replies
1.9k
views
Getting errors with makeTxDbFromBiomart
genomicfeatures biomart maketxdbfrombiomart
updated 5.3 years ago by ▴ 790 • written 5.3 years ago by ▴ 10
2
votes
13
replies
1.6k
views
makeTranscriptDbFromBiomart failure from Data Anomaly
biomart genomicfeatures
updated 7.2 years ago by 15k • written 7.2 years ago by ▴ 80
2
votes
12
replies
1.9k
views
biomaRt does not return entrezgene id
bioconductor biomart entrez gene identifiers ensembl ensembl mart
updated 5.1 years ago by ▴ 790 • written 5.1 years ago by • 0
3
votes
12
replies
1.1k
views
adding attributes affects number of results returned
biomaRt
updated 12 months ago by ★ 5.5k • written 5.4 years ago by • 0
0
votes
12
replies
2.5k
views
problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
updated 12.2 years ago by ★ 2.0k • written 12.2 years ago by ▴ 50
2
votes
12
replies
2.2k
views
Error: failed to load 'AnnotationHub' resource
biomart annotationhub
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 10
0
votes
12
replies
1.4k
views
Biomart server down?
Genetics Cancer biomaRt Genetics Cancer biomaRt
updated 11.0 years ago by ▴ 660 • written 11.0 years ago by ▴ 20
0
votes
12
replies
1.8k
views
BioMart and Ensembl questions
convert biomaRt convert biomaRt
updated 12.7 years ago by ▴ 970 • written 12.7 years ago by ▴ 10
6
votes
12
replies
3.6k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 5.1 years ago by • 0 • written 5.3 years ago by ▴ 100
0
votes
12
replies
1.2k
views
Gviz: feature protein_coding not working
gviz biomart
updated 5.8 years ago by ★ 1.6k • written 5.8 years ago by • 0
5
votes
11
replies
870
views
an error in BioMart regarding gene annotations
biomart AnnotationDbi
updated 3.9 years ago by ▴ 50 • written 3.9 years ago by ▴ 640
5
votes
11
replies
748
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 21 months ago by ★ 5.5k • written 21 months ago by • 0
0
votes
11
replies
1.4k
views
Problems in retrieving 3'UTR sequences of ALL human genes using biomaRt
biomaRt biomaRt
updated 9.8 years ago by ★ 1.1k • written 9.8 years ago by ▴ 200
2
votes
11
replies
3.1k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 15 months ago by ★ 5.5k • written 20 months ago by • 0
0
votes
11
replies
2.6k
views
Missing data after BiomaRt query
biomart bioconductor
updated 7.2 years ago by 15k • written 7.2 years ago by • 0
2
votes
10
replies
2.2k
views
biomaRt package problem
biomart
updated 6.5 years ago by ▴ 790 • written 6.5 years ago by • 0
0
votes
10
replies
1.5k
views
Querying dbSNP
biomaRt biomaRt
updated 12.6 years ago by ★ 7.2k • written 12.6 years ago by ▴ 480
3
votes
10
replies
3.1k
views
Getting a list of all tRNA encoding genes for an organism?
trna ncrna genomicfeatures featuredb biomart
updated 7.1 years ago by 15k • written 7.1 years ago by ▴ 150
1
vote
10
replies
2.4k
views
Attributes construct error in biomaRt
biomart
updated 7.1 years ago by ▴ 90 • written 7.1 years ago by • 0
0
votes
10
replies
893
views
biomaRt manual
affy convert biomaRt affy convert biomaRt
updated 15.1 years ago by 6.5k • written 15.1 years ago by ★ 1.2k
0
votes
10
replies
1.4k
views
Retrieve Entrez IDs for enriched GO terms
Microarray Annotation GO limma GOstats biomaRt Microarray Annotation GO limma GOstats
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ▴ 90
8
votes
10
replies
782
views
Genes listed in GO categories
goseq biomart
updated 3.9 years ago by 45k • written 3.9 years ago by • 0
9
votes
9
replies
2.8k
views
biomaRt error when connecting to host
biomart host connection
updated 5.1 years ago by ★ 5.5k • written 5.1 years ago by ★ 1.5k
0
votes
9
replies
1.3k
views
Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
SNP biomaRt SNP biomaRt
updated 10.5 years ago by ★ 6.7k • written 10.5 years ago by ▴ 100
4
votes
9
replies
2.1k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 11 months ago by ★ 5.5k • written 15 months ago by ▴ 20
1
vote
9
replies
795
views
How can I retrieve a protein's coding sequence using getSequence
biomaRt
17 months ago heiko_kin ▴ 50
0
votes
9
replies
1.1k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 15.0 years ago by ★ 7.4k • written 15.0 years ago by ★ 2.2k
0
votes
9
replies
2.0k
views
Problems Counting Reads with summarizeOverlaps
biomaRt Rsamtools biomaRt Rsamtools
updated 8.4 years ago by ★ 6.7k • written 8.5 years ago by ▴ 300
3
votes
9
replies
1.0k
views
find next non-overlapping nth elements of a given region
biomart granges findoverlaps
updated 5.9 years ago by 11k • written 5.9 years ago by ▴ 20
4
votes
9
replies
2.0k
views
News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 6.1 years ago by ▴ 20 • written 6.2 years ago by ▴ 790
1
vote
8
replies
2.9k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 2.2 years ago by 59k • written 2.2 years ago by ▴ 10
10
votes
8
replies
1.3k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
2.9 years ago m93 ▴ 10
2
votes
8
replies
777
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt software error
updated 9 months ago by ★ 5.5k • written 23 months ago by • 0
1
vote
8
replies
1.6k
views
BiomaRt package not working
biomart getbm
5.1 years ago Didi ▴ 10
2
votes
8
replies
905
views
BiomaRt and phytozome
biomaRT Rcurl phytozome
updated 3.0 years ago by ★ 5.5k • written 3.0 years ago by ▴ 20
0
votes
8
replies
1.1k
views
Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
updated 13.7 years ago by ★ 5.5k • written 13.7 years ago by ▴ 270
0
votes
8
replies
1.2k
views
IPI to entrez id
Proteomics GO biomaRt Proteomics GO biomaRt
11.2 years ago Dick Beyer ★ 1.4k
0
votes
8
replies
1.2k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 11.1 years ago by ▴ 930 • written 11.1 years ago by ▴ 860
50 results • Page 1 of 1
Recent ...
Replies
Comment: merging VCF files by lesefo6448 • 0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
Comment: featureCounts: 0% successfully assigned fragments by ATpoint ★ 1.2k
What you have to do is to check whether the chromosome names in the BAM file are part of the GTF. Do it programatically, not by eye. Extrac…
Comment: champ.SVD() error, assumes standard class() function will return single string by Basti ▴ 280
What is class(`yourbeta`) ?
Answer: methylated/unmethylated media threshold (EPIC assay) by ramonfallon • 0
OK, so the closest I could get as an answer to this was from a Kasper Hansen Illumina video from 2013 Where he says there have been some d…
Comment: Load packages when using BatchtoolsParam by jianhai.zhang • 0
You are right: In bplapply(), the environment of FUN (other than the global environment) is serialized to the workers. I tested `smallFun(x…
Votes
Answer: Load packages when using BatchtoolsParam
Comment: Load packages when using BatchtoolsParam
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
A: DESeq2: thousands of NA for pvalues?
Awards • All
Popular Question to Gyan Prakash Mishra • 0
Scholar to ATpoint ★ 1.2k
Teacher to Gordon Smyth 45k
Scholar to Matthew McCormack ▴ 180
Scholar to jared.andrews07 ▴ 30
Locations • All
Switzerland, 4 minutes ago
Switzerland, 9 minutes ago
Norway, 10 minutes ago
India, 10 minutes ago
United Kingdom, 13 minutes ago
Traffic: 1092 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6